Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00339 ATGATAAATACTGGCTTCATCATCTTGGCCGGTTCAGCCTTGAAAGCTGCGTATGTTCTATTTAGGGATGATGGTATGTTGAAACTTCCATATTGTATCATCATAGCTGGAATTATGTGTGCAATTTTTGCCATATCCATTCCTCATCTCTCAGCTCTTGGAATTTGGCTAGCAATTTCGACAGTCTTCAGCCTAGTATATATTATTGTTGCATTTGCACTATCGGTTAAAGACGGATTACAACTACCACCTCGAGATTACAACATTCCAGGAGAGGGTATGGGCAAAGTATTTACAACAATTGGGGCATCTGCGAACCTCGTGTTTGCATATAATACTGGCATGCTTCCTGAGATACAGGCAACGATTAGGCAGCCAGTTGTGAAGAACATGATGAAGGCCCTGTACTTTCAGTTTACTGTTGGAGTTCTACCAATGTACCTTGTTACCTTTACAGGATACTGGGCTTATGGATCTTCCACAGAAGTGTATTTGTTGAATAGTGTGCATGGTCCAGTATGGGTGAAGGCCTTGGCCAATATCTCAGCTTTTCTTCAATCGGTCATTTCATTGCATATTTTCGCAAGTCCAATGTACGAGTATTTGGATACTAGATTTGGGGTCAAAGGAAGCGCATTGAATGTTAAAAACTTGTCATCTAGAATCGGGCTAAGAGGTGGCTACCTGACCATCAACACATTTGTGGCGGCTTTCCTGCCATTCCTTGGAGATTTCATGAGCCTCACGGGAGCGATTAGCACATTTCCCCTAACATTTATTCTTGCAAACCATATGTACCTTGTGGCAAAGAAAGAGAAACTATCAGGCTCACAAAAGTGTTGGCACTGGCTCAACATTTGTTTCTTTTCCCTTCTGTCTCTTGCAGCAACAATTTCAGCCATACGACTCATTGCAGTGGACTCCAAAGAATACCATCTTTTTGCTGATTTATGA 954 0.4182 MINTGFIILAGSALKAAYVLFRDDGMLKLPYCIIIAGIMCAIFAISIPHLSALGIWLAISTVFSLVYIIVAFALSVKDGLQLPPRDYNIPGEGMGKVFTTIGASANLVFAYNTGMLPEIQATIRQPVVKNMMKALYFQFTVGVLPMYLVTFTGYWAYGSSTEVYLLNSVHGPVWVKALANISAFLQSVISLHIFASPMYEYLDTRFGVKGSALNVKNLSSRIGLRGGYLTINTFVAAFLPFLGDFMSLTGAISTFPLTFILANHMYLVAKKEKLSGSQKCWHWLNICFFSLLSLAATISAIRLIAVDSKEYHLFADL 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00339 317 PANTHER OS05G0424000 PROTEIN-RELATED 1 312 - -
Cca01g00339 317 Pfam Transmembrane amino acid transporter protein 1 300 IPR013057 -
Cca01g00339 317 PANTHER PROLINE TRANSPORTER 1 1 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00339 Cca-Chr1 3852846 3855709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00339 1 317 Organic Solute Cotransporters AT3G55740 74.763 2.13e-177 494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00339 - - gmx:100784554 536.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00339 01 3852846 3855709 Cca05g01556 05 34762250 34766710 PCT