Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01539 ATGGCGTACAAAGTCGACCATGAATACGACTACCTCTTCAAGGTCGTATTGATCGGTGACTCCGGCGTTGGAAAGTCCAATATCCTCTCCAGATTCACGCGAAACGAGTTCTGCTTGGAATCTAAGTCTACCATTGGGGTTGAATTCGCTACCAGAACATTGCAGGTGGAGGGGAAGACTGTAAAGGCACAAATATGGGACACTGCAGGCCAAGAGAGGTACAGAGCCATCACCAGTGCCTACTATAGAGGAGCTGTTGGTGCCTTGTTGGTGTATGACATAACCAAGAGGCAAACATTTGACAATGTGCAAAGGTGGCTTCGTGAACTAAGGGACCATGCAGACTCCAACATTGTTATTATGATGGCTGGTAACAAATCTGACCTTAATCATCTCAGAGCAGTTTCCACTGAAGATGCTCAAAGTTTGGCTGAGAGGGAAGGTTTGTCCTTTCTAGAAACTTCAGCATTGGAGGCATACAATGTTGAGAAGGCTTTTCAGACCATTTTGTTTGACATATATCACATTATAAGTAAAAAAGCACTGGCAGCACAAGAGGCTACTTCCTCTAGCGTTCCCCAAGGAACTACCATAAATGTCTCAAATATAGCCGGACCCAAAAACGACGTCGCGGACCTGAGAAAATTGCAGAAGAACGTTCCTTGTTTGAAATTTGGCAGAGCGAAAACAAAGTGGAAAAAGAAGCAGAGAAAGAGAATAAATGCTCGATTCACTGTTGCGAGTCCTGATAGTGGTTCAATTCGGTTAGAGAAAGTGGTGAAGGAGAAAATAGGAAAGGGGAAGAATCGGAACTCGGAGATGCAAATGGAAGCTAGGGTTGGTGTGGCAGTTGACGGTGGTGGTGTACGAAAGTTGGTGCAACCGCCGCCGCAGCAGATTGGGACTGTTTCGCAGCTTCTCGCCGGAGGAGTCGCCGGCGCGTTAAGCAAGACGTTTACGGCGCCGCTTGCCAGACTCACCATCCTCTTTCAGGTTCAGGGAATGCATTCCAACGTTGCGACTTTGAGAAAAGCCAGCATATGGTCTGAGGCTTCTCGAATTATCCATGAAGAGGGGTTTAGGGCTTTCTGGAAAGGGAATCTGGTTACCATTGCTCACCGCTTACCTTATTCTTCGGTTAATTTTTACTCGTACGAGCACTATAAGAAGTTGCTAAAGATGGTTCCGGGACTACAAAGTCATAGGGATAATGTTAGTGCAGACCTTTGCGTACATTTTGTTGGTGGTGGCCTGGCAGGAATAACCGCTGCTACATCTACTTATCCTTTGGATCTTGTAAGAACGCGGCTTGCTGCACAGACAAATTTTACCTACTACAGAGGTATCTGGCATGCTTTACAAACAATTACCAAGGAAGAAGGAATATTTGGTCTGTATAAGGGACTTGGAACTACACTCTTGACAGTAGGGCCAAGTATAGCTATCAGCTTCTCTGTGTATGAAACCTTGAGATCTTTTTGGCAGTCAAATAGACCCGATGATTCAACTGTTGCTGTTAGTCTGGCATGCGGCAGTCTTTCAGGCATTGCATCATCAACAGCAACGTTCCCCTTGGATCTTGTGAGGCGGAGGAAGCAACTTGAGGGGGCTGGTGGGCGAGCACGTGTGTATACAACAGGTATTTGTTTTATGACTTATGAGACGTTGAAGATGCTTTTAGCAGATGTTGCCACTGCTTAG 1701 0.4603 MAYKVDHEYDYLFKVVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSTEDAQSLAEREGLSFLETSALEAYNVEKAFQTILFDIYHIISKKALAAQEATSSSVPQGTTINVSNIAGPKNDVADLRKLQKNVPCLKFGRAKTKWKKKQRKRINARFTVASPDSGSIRLEKVVKEKIGKGKNRNSEMQMEARVGVAVDGGGVRKLVQPPPQQIGTVSQLLAGGVAGALSKTFTAPLARLTILFQVQGMHSNVATLRKASIWSEASRIIHEEGFRAFWKGNLVTIAHRLPYSSVNFYSYEHYKKLLKMVPGLQSHRDNVSADLCVHFVGGGLAGITAATSTYPLDLVRTRLAAQTNFTYYRGIWHALQTITKEEGIFGLYKGLGTTLLTVGPSIAISFSVYETLRSFWQSNRPDDSTVAVSLACGSLSGIASSTATFPLDLVRRRKQLEGAGGRARVYTTGICFMTYETLKMLLADVATA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01539 566 Pfam Mitochondrial carrier protein 502 540 IPR018108 -
Cca05g01539 566 Pfam Mitochondrial carrier protein 410 497 IPR018108 -
Cca05g01539 566 Pfam Mitochondrial carrier protein 299 393 IPR018108 -
Cca05g01539 566 ProSiteProfiles Solute carrier (Solcar) repeat profile. 407 493 IPR018108 -
Cca05g01539 566 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 178 IPR027417 -
Cca05g01539 566 Gene3D Mitochondrial carrier domain 297 563 IPR023395 -
Cca05g01539 566 ProSiteProfiles Solute carrier (Solcar) repeat profile. 300 391 IPR018108 -
Cca05g01539 566 ProSiteProfiles small GTPase Ras family profile. 1 247 IPR001806 GO:0003924|GO:0005525
Cca05g01539 566 ProSiteProfiles small GTPase Rab1 family profile. 8 222 - -
Cca05g01539 566 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 296 548 - -
Cca05g01539 566 PANTHER SOLUTE CARRIER FAMILY 25 296 548 - -
Cca05g01539 566 Pfam Ras family 14 173 IPR001806 GO:0003924|GO:0005525
Cca05g01539 566 PRINTS Transforming protein P21 ras signature 116 129 - -
Cca05g01539 566 PRINTS Transforming protein P21 ras signature 13 34 - -
Cca05g01539 566 PRINTS Transforming protein P21 ras signature 36 52 - -
Cca05g01539 566 PRINTS Transforming protein P21 ras signature 151 173 - -
Cca05g01539 566 PRINTS Transforming protein P21 ras signature 54 76 - -
Cca05g01539 566 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Cca05g01539 566 SMART rab_sub_5 13 176 - -
Cca05g01539 566 SUPERFAMILY Mitochondrial carrier 299 555 IPR023395 -
Cca05g01539 566 Gene3D - 5 204 IPR027417 -
Cca05g01539 566 SMART ran_sub_2 18 213 - -
Cca05g01539 566 CDD Rab11_like 10 174 - -
Cca05g01539 566 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Cca05g01539 566 SMART ras_sub_4 10 176 - -
Cca05g01539 566 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01539 Cca-Chr5 34531239 34545451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01539 274 565 Organic Solute Cotransporters AT3G55640 65.046 1.89e-146 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01539 - - gmx:100801749 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01539 05 34531239 34545451 Cca05g01539 05 34531239 34545451 ECH
Cca01g00354 01 4060902 4061670 Cca05g01539 05 34531239 34545451 PCT