Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00354 ATGGCATACAAAGTGGACCATGAATATGACTATCTCTTCAAGATCGTACTCATTGGGGACTCTGGTGTTGGAAAATCCAATATACTCTCCAGGTTTACAAGAAATGAGTTCTGCTTGGAGTCTAAGTCTACCATTGGGGTTGAATTCGCAACAAGAACATTACAGGTGGAGGGGAAGACTGTGAAGGCACAAATATGGGACACAGCAGGTCAAGAGAGGTACCGAGCAATCACAAGTGCATACTACAGAGGAGCAGTAGGTGCCTTGTTGGTGTACGACATAACCAAGAGGCAAACATTCGACAATGTGCAGAGGTGGCTCCGTGAGCTGAGGGACCACGCGGACTCCAACATTGTTATCATGATGGCTGGAAACAAGTCTGACCTAAACCATCTTAGAGCAATTGCTACCGAAGATGCTCAAACTTTGGCTGAGAAGGAGGCTCTCTCTTTCCTAGAGACTTCGGCATTGGAGGCCTTCAATGTCGAGAAAGCTTTCCAAACCATTTTGTTTGATATATACCAAATCGTAAGTAAAAAGGCACTCGCTGCTCAGGAGGCAGCTTCCACTACCACTACCCTTCCTCAAGGGACTACCATTAATGTCTCTAATATGTCAGCTAGTGCCGAGAAGAGAACACCTTGTTGCTCCAATTAA 657 0.4566 MAYKVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAIATEDAQTLAEKEALSFLETSALEAFNVEKAFQTILFDIYQIVSKKALAAQEAASTTTTLPQGTTINVSNMSASAEKRTPCCSN 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00354 218 Pfam Ras family 14 174 IPR001806 GO:0003924|GO:0005525
Cca01g00354 218 Gene3D - 5 216 IPR027417 -
Cca01g00354 218 TIGRFAM small_GTP: small GTP-binding protein domain 11 169 IPR005225 GO:0005525
Cca01g00354 218 SMART ras_sub_4 10 176 - -
Cca01g00354 218 PANTHER - 1 218 - -
Cca01g00354 218 ProSiteProfiles small GTPase Ras family profile. 1 218 IPR001806 GO:0003924|GO:0005525
Cca01g00354 218 PANTHER RAS-RELATED PROTEIN RAB11C-LIKE 1 218 - -
Cca01g00354 218 ProSiteProfiles small GTPase Rab1 family profile. 8 216 - -
Cca01g00354 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 178 IPR027417 -
Cca01g00354 218 CDD Rab11_like 10 174 - -
Cca01g00354 218 SMART rab_sub_5 13 176 - -
Cca01g00354 218 SMART rho_sub_3 15 172 IPR001806 GO:0003924|GO:0005525
Cca01g00354 218 ProSiteProfiles small GTPase Rho family profile. 6 174 - -
Cca01g00354 218 PRINTS Transforming protein P21 ras signature 13 34 - -
Cca01g00354 218 PRINTS Transforming protein P21 ras signature 36 52 - -
Cca01g00354 218 PRINTS Transforming protein P21 ras signature 54 76 - -
Cca01g00354 218 PRINTS Transforming protein P21 ras signature 116 129 - -
Cca01g00354 218 PRINTS Transforming protein P21 ras signature 151 173 - -
Cca01g00354 218 SMART ran_sub_2 18 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00354 Cca-Chr1 4060902 4061670 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00354 K07904 - gmx:100799521 397.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00354 01 4060902 4061670 Cca05g01539 05 34531239 34545451 PCT