Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca05g01522 | ATGGCCATCAACAATGGCGAGGGAAGTGGAGCATTGCAGAGGGTGCTTTACATGTGGGGTTACCTTCCCGGAGCTCTGCCGCAGAGGACGCCGCTCTTGACGCCGGTCGCCGTTAGGTTACCGCCGTGTGGTTACTCTTGGAATGATGTTTGCGGCGGCGGATGTGGATTCGCTATTGCTATCTCTGGCCAAAGCTATTTGACTTCTGGCAAGCATGGGGAAACTCCAGAGCCTTTCCCTCTTCCAACTGAAGCCTCTATTGTAAAAGCTGCGGCAGGATGGGCTCATTGTGTCGCTGTAACAGAACATGGAGAAGTTTATACATGGGGATGGAAAGAATGTATTCCCTCTGGGAGGGTATTTGGTGAACCATCAACAGGGGTAAGTCTTGAAAAAGATGTGCCAGGAAGGCACAGTCCATTTTCAACAGAGCAAGTGAGCCCTCGTTCTCAAGGCTCAAGATCTACCGGAGGTACTGCCTCCAGTAACAGTGGAGAAGAAAGTACAAAGAGAAGGAGAGTGTCTTCAGCAAAGCAAACAGCTGAAAGTTCGTCGTCCAGTGATGATAGTCTGACAGCATTTCCTTGTCTTGTCACACTAAACCCAGGGATAAGGATAGCTAGTGTTGCTGCTGGTGGACGCCATACACTTGCATTGTCAGATACAGGACTGGTGTGGGCCTGGGGCTATGGAGGGGAAGGACAGCTTGGTTTGGGTTCCAGAATACGCATGGTTTCATCTCCTCATCTTGTTCCTTGTATTGATTCCTCTTATTATGGTAAAGATAGATCTGCAACATTGGCTCGAGGAAGCCTAGGTTCAGAGGGACATAATTTTAGAGTTCCTGGAAGTTATATAAAGAGAATTGCTTGTGGAGGTCGACATAGTGCAGTAATAACAGATGCTGGAGCCATGCTTACTTTTGGTTGGGGACTCTATGGACAGTGTGGACAAGGAACTACCGATGATGAACTAAGCCCAACTTGTGTATCTTCCTTATTGGGTATCCACATAGACGGAGTTGCTGCAGGACTGTGGCATACAGTCTGTACATCTGCTGATGGTGATGTGTATGCATTTGGGGGGAATCAGTTTGGGCAGCTGGGAACTGGTGCTGATCAAGCTGAGACTCTACCAAGACTAGTGGATTCTCCGAGTTTGGAAAATTTGCGTGTGAAGAACATATCTTGCGGTGCTCGTCACACTGCCTTAGTAACAGATTGTGGAAAAGTTTTCTGCTGGGGTTGGAACAAATATGGACAGCTGGGCCTTGGGGACGTGATTGACCGTAACATTCCTTCCGAAGTCACCGTTGAAGGTAGAGAAAATGTAATTAGCCAGGCAGAGGAGGTTGATGGAGTGACGCGTGGGAGTGAGGATGGTGCGGTTAAGGAGGTGGAGAGTGAGAAGTTGGAGAAGATCAAGGTATTTTAG | 1434 | 0.484 | MAINNGEGSGALQRVLYMWGYLPGALPQRTPLLTPVAVRLPPCGYSWNDVCGGGCGFAIAISGQSYLTSGKHGETPEPFPLPTEASIVKAAAGWAHCVAVTEHGEVYTWGWKECIPSGRVFGEPSTGVSLEKDVPGRHSPFSTEQVSPRSQGSRSTGGTASSNSGEESTKRRRVSSAKQTAESSSSSDDSLTAFPCLVTLNPGIRIASVAAGGRHTLALSDTGLVWAWGYGGEGQLGLGSRIRMVSSPHLVPCIDSSYYGKDRSATLARGSLGSEGHNFRVPGSYIKRIACGGRHSAVITDAGAMLTFGWGLYGQCGQGTTDDELSPTCVSSLLGIHIDGVAAGLWHTVCTSADGDVYAFGGNQFGQLGTGADQAETLPRLVDSPSLENLRVKNISCGARHTALVTDCGKVFCWGWNKYGQLGLGDVIDRNIPSEVTVEGRENVISQAEEVDGVTRGSEDGAVKEVESEKLEKIKVF | 477 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca05g01522 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 409 | 445 | IPR000408 | - | |
| Cca05g01522 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 354 | 404 | IPR000408 | - | |
| Cca05g01522 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 303 | 350 | IPR000408 | - | |
| Cca05g01522 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 409 | 467 | IPR000408 | - | |
| Cca05g01522 | 477 | MobiDBLite | consensus disorder prediction | 126 | 190 | - | - | |
| Cca05g01522 | 477 | SUPERFAMILY | RCC1/BLIP-II | 29 | 438 | IPR009091 | - | |
| Cca05g01522 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 395 | 405 | IPR000408 | - | |
| Cca05g01522 | 477 | Gene3D | - | 6 | 124 | IPR009091 | - | |
| Cca05g01522 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 209 | 225 | IPR000408 | - | |
| Cca05g01522 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 87 | 100 | IPR000408 | - | |
| Cca05g01522 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 344 | 362 | IPR000408 | - | |
| Cca05g01522 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 404 | 425 | IPR000408 | - | |
| Cca05g01522 | 477 | PRINTS | Chromosome condensation regulator RCC1 signature | 106 | 122 | IPR000408 | - | |
| Cca05g01522 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 355 | 408 | IPR000408 | - | |
| Cca05g01522 | 477 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN | 13 | 441 | - | - | |
| Cca05g01522 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 206 | 235 | - | - | |
| Cca05g01522 | 477 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 87 | 111 | - | - | |
| Cca05g01522 | 477 | Gene3D | - | 125 | 464 | IPR009091 | - | |
| Cca05g01522 | 477 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 13 | 441 | - | - | |
| Cca05g01522 | 477 | MobiDBLite | consensus disorder prediction | 140 | 165 | - | - | |
| Cca05g01522 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 289 | 299 | IPR000408 | - | |
| Cca05g01522 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 223 | 302 | IPR000408 | - | |
| Cca05g01522 | 477 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 303 | 354 | IPR000408 | - | |
| Cca05g01522 | 477 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 209 | 219 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca05g01522 | Cca-Chr5 | 34323429 | 34332178 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca05g01522 | - | - | gmx:100807837 | 813.142 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca05g01522 | 05 | 34323429 | 34332178 | Cca05g01522 | 05 | 34323429 | 34332178 | ECH | |
| Cca01g00369 | 01 | 4210024 | 4216496 | Cca05g01522 | 05 | 34323429 | 34332178 | PCT |