Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00369 ATGAATGGCGAGGAGAATGAAGCAATGCAAGTGGAGAAGGAGAAGTTGGTGTACATGTGGGGTTATCTTCCCGGAGCTCTACCACAGAGGACGCCGCTATTGACGCCGGTGCTCGTTAGGGTTCCGCCGTCAAGCTACTCTTGGACGGAGGTTTGCGGCGGTGGCTGCGGATTCGCCATGGCTATCTCTGAGCCTGGAAAGCTCATAACATGGGGGTCAACGGATGATTTAGGCCAAAGCTATGTCACATCTGGCAAACACGGGGAAAATCCAGAGCCTTTCCCTCTTCCAACTGAAGTGACTATTGTAAAAGCTGCAGCTGGATGGGCACATTGTGTTTCTGTGACGGATTGTGGACAAGTTTACACATGGGGATGGAGAGAATGTATTCCCTCTGGGAAGTTGTTTGGTGAATCATTAACTGGGGAAAGCCCCGAAAAGGATGTACCAGGAAGGCAAAGTACATTTCTGACGGAGCAAGCGAGCCCTCGTTCTCAAGGCTCAAAATCTGTTGGAGGAACTGCCCCTAGTACCAGTGGAGAAGAAAATACAAAGAGAAGAAGAGTATCATCAACAAAGCAAACAGCTGAAACCTCATCATCTAGTGATGATACCCTGACAGCATTGCCATGTCTTGTCACACTAAATCCAGGTGTAAGAATAACAAGTGTTGCTGCAGGTGGTCGCCATACCTTAGCATTGTCAGATATAGGACAGGTGTGGGGTTGGGGCTATGGAGGTGAAGGCCAGCTTGGTTTGGGTAGTAGAATACGAATGGTGTCCTCTCCTCATCTAGTTCCTTGTATTAATTCCTCTTCTTATGGTAAAGACATATCGGCCTCGTTGGCTCGAGGAAGCATGGGTTCAGATGGGCAAAATTTCAGAGTTCCTGGAAATTATATAAAGGGCATTGCTTGCGGAGGTCGACACAGTGCAGTAATCACAGATGTTGGAGTTGTGCTTACATTTGGTTGGGGACTTTATGGACAGTGTGGGCAAGGAAGTACAGATGATGAACTAAGCCCGACTTGTGTATCTTCCTTGTTGGGTATTCGAATAGCGGGAGTCGCTGCAGGACTGTGGCATACTGTGTGTACATCTGCCCATGGTGATGTATATGCGTTTGGGGGAAACCAGTTTGGGCAACTGGGAACTGGTGCTGATCAAGCTGAGACTATACCAAGGCTACTGGATTGTCCGAGCTTGGAAAATGTAAATGTAAAGAGCATATCTTGTGGGGCTCGTCACAGTGCTATTATAACTGGTAGGAGTACTATAACACACACAACTGCTTATGGCATTTTCATTCTACATGGGCAAAGCTATCTTTCCAAGACTAAAGTCACTTTGATGCATATCTAA 1362 0.4714 MNGEENEAMQVEKEKLVYMWGYLPGALPQRTPLLTPVLVRVPPSSYSWTEVCGGGCGFAMAISEPGKLITWGSTDDLGQSYVTSGKHGENPEPFPLPTEVTIVKAAAGWAHCVSVTDCGQVYTWGWRECIPSGKLFGESLTGESPEKDVPGRQSTFLTEQASPRSQGSKSVGGTAPSTSGEENTKRRRVSSTKQTAETSSSSDDTLTALPCLVTLNPGVRITSVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRIRMVSSPHLVPCINSSSYGKDISASLARGSMGSDGQNFRVPGNYIKGIACGGRHSAVITDVGVVLTFGWGLYGQCGQGSTDDELSPTCVSSLLGIRIAGVAAGLWHTVCTSAHGDVYAFGGNQFGQLGTGADQAETIPRLLDCPSLENVNVKSISCGARHSAIITGRSTITHTTAYGIFILHGQSYLSKTKVTLMHI 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00369 453 PRINTS Chromosome condensation regulator RCC1 signature 356 372 IPR000408 -
Cca01g00369 453 PRINTS Chromosome condensation regulator RCC1 signature 240 256 IPR000408 -
Cca01g00369 453 PRINTS Chromosome condensation regulator RCC1 signature 372 386 IPR000408 -
Cca01g00369 453 PRINTS Chromosome condensation regulator RCC1 signature 221 234 IPR000408 -
Cca01g00369 453 Pfam Regulator of chromosome condensation (RCC1) repeat 221 250 - -
Cca01g00369 453 Gene3D - 150 440 IPR009091 -
Cca01g00369 453 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 10 435 - -
Cca01g00369 453 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 10 435 - -
Cca01g00369 453 Pfam Regulator of chromosome condensation (RCC1) repeat 318 365 IPR000408 -
Cca01g00369 453 Pfam Regulator of chromosome condensation (RCC1) repeat 370 420 IPR000408 -
Cca01g00369 453 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 304 314 IPR000408 -
Cca01g00369 453 SUPERFAMILY RCC1/BLIP-II 17 425 IPR009091 -
Cca01g00369 453 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 66 118 IPR000408 -
Cca01g00369 453 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 369 IPR000408 -
Cca01g00369 453 MobiDBLite consensus disorder prediction 151 180 - -
Cca01g00369 453 MobiDBLite consensus disorder prediction 140 204 - -
Cca01g00369 453 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 224 234 IPR000408 -
Cca01g00369 453 Gene3D - 8 139 IPR009091 -
Cca01g00369 453 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 423 IPR000408 -
Cca01g00369 453 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 238 317 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00369 Cca-Chr1 4210024 4216496 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00369 - - gmx:100778841 765.763
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00369 01 4210024 4216496 Cca05g01522 05 34323429 34332178 PCT