Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01520 ATGAAAGCTTCTGTCACCAATGCCGATTTCCCCAGAACCCCTCTCTTCCTCAAGATCGTCTTCTTCCTATTCGTCGCCCTCACCTTCTTCTTCCTCGGCAACCACTTCTCCGACGGCTCCCACCAGCTCATCTTCTTCTccgccaccgccgccacctccgccaccgtcaccATATCCCCCAACTTCAACCAATTCTTCAACGTCTCCGCCCTAATCGACCCCCTTCCCACTCCCACCCAAACCCCCGAACCTCCCCCCGCACCGGAGCTTCGGGACGCAATCAAGAGGTTCGGGATCCTCAacgacaacggcaccatgtccgacgacttcgaggtcggccacttcgacgacgacgacgacggcgacggcgTAACGGAGGAGCGGGGGAACGACACCGCCTCCGCTCCCAAGAAACTCGCCGTGGCCAAGTTCGCCATGTGTCCGCGCAGCATGAGCGAGCTTATACCGTGTTTGGATAATGCCGACGCGATTCGGAGGCTTAAGTCCACTGAGAGAGGGGAAAAGTTGGAGAGGCATTGTCCCGAAGAGGGGAAGAGGTTCAATTGCCTGATTCCGCCGCCTAAAGGGTACCGTTCCCCCATTCCGTGGCCTCGAAGCCGCGATGAGGTTTGGTACAGTAATGTTCCTCACAGTCGTCTTGTTGAAGATAAAGGAGGTCAAAACTGGATTTCCAGAGGCAAGGATAAGTTTAGGTTTCCAGGCGGTGGTACGCAATTTATACATGGAGCAGATCAATACTTGGACCATATTTCTGAGATGGTTCCTGATATAAAATTTGGGCAGAATATACGAGTTGCTCTTGATGTTGGCTGTGGTGTAGCTAGTTTTGGTGCTTACTTATTGTCAAGAAATGTCATAACCATGTCTGTTGCTCCCAAGGATGTTCATGAGAATCAGATCCAGTTTGCTCTCGAGCGTGGTGTGCCAGCAATGATTGCTGCATTTGCAACCAGACGATTATTATATCCAAGTCAAGGTTTTGACTTGATACATTGTTCGCGCTGTAGAATTAATTGGACTCGAGATGATGGTATTTTACTACTTGAAGTTAATAGGATGCTAAGGGCTGGAGGGTACTTTGTCTGGGCCGCCCAGCCAGTTTATAAACATGAAGAAGTTTTAGAAGAACAATGGGAAGAGATGCTTAATCTTACTACTCGTCTGTGCTGGAAGTTTGTGAAAAAAGATGGGTATGTTGCAATATGGCAGAAACCTACCGACAATAGCTGCTATCTAAACCGTGAGGCAGGAACTCAACCTCCACTGTGTGACCAAAGTGATGACCCCGACAATGTTTGGTATGTTAATCTAAAAGCATGCATCTCTCAATTGCCTGAGGATGGATATGGAGCAAATGTTGCCAGATGGCCTGCACGTTTGCATACTCCACCTGAAAGGCTTCAAAGCATAAAATTTGATGCTTTCATATCCAGAAAGGAGCTTTTTAAGGCTGAATCAAAATATTGGGATGAGATAATAGCCAGCTATGTACGTGCTTTACATTGGAAGAAGATGAAATTAAGAAATGTTATGGACATGAGAGCTGGTTTTGGAGGATTTGCAGCTGCATTGATTGATCAGAACCTTGACAGCTGGGTTATGAATGTTGTTCCTGTTAGTGGTTCTAACACCTTGCCTGTTATATATGACCGTGGGCTGATTGGAGTTATGCATGACTGGTGTGAACCATTTGACACCTACCCAAGAACCTATGATTTTCTGCATGCTGCAAACCTGCTTTCTGTTGAGAAGAAAAGATGCAACGTGTCATCAATTATGCTGGAGATGGATCGGATTCTAAGACCTGGTGGACGGGCATACATCCGTGATACTCTTGGCATCATGGATGAGCTTGTAGAGATTGGCAAGGCTATAGGTTGGCAAATGACATTGCGAGATACAGCTGAGGGTCCTCATGCAAGTTATAGGGTCTTGTTGAAACTATATCTCTCTCTCACACTTGAGTACTTCACGGGAGTGGTCGTGTCCGGTTCTGCCGAGGCTGAGTATATTACGGTGTATAGTTGGTGGTGGTGGATGGTTTTAGAGATGGATATGAGGCATTTTAGAAGTGAATTCTTGCCCAAAACGCTCAACCCTTCTTCAACTTACCTCCAATTTTCTCCTCTTAGACCATTCCACAAAACCCCAAACCTAAAATTCCATTCACAGAAACGCTTTGCAGTTGTGTCATTCTCCCAAAACCCTAAACCAATTAGTGAGTTGTCAGTTTTGAGGCGGAATCCAGCATGCTCAAGGGATCTCAGGTCTTATGCTGGTCGTAGCAAGAAGTCTGGTGGTGAAGGCTCCTCTTCTGGTCGAATTGAAGGCTATGCTGAGTTCCGAAGACGGTTGAAGCGCAATTCAAGGGCAAGAAGCAGGAAATATGCTGAGTCTCTATTCTACCGGCTGAAAAACCCGAGGGGAGGTGGGAATTATCCCAATAACTTCACTGAGGATGAGCTCCAACAAATTGGTCTTGGGTATGATCGAATGGTTCGGTTCATGGAGAAGGATGACCCAAATTTACGTCATCCATATGATTGGTACAAGTATGGACAATATGGACCTTACTCTTGGCGTGGAGTTGTTGTTGGCGACCCAGTTCGTGGTCGGTTCTCGGATGAGTGTGTGACATTAATCAGTGAAGTGAAGGACCATGAGGAGTGGGAGAAGATTGAACAAGCTGAAATGGCTGAAGAATATGCGGAGAAAGTGAAGCGGTTGGATCAAAGTAAATTAAGGTATTTTTGGGTATTCGTAAGGCACCCAAGGTGGAGAATTTCAGAGCATCCTTGGCAGCAATGGACATTAGTTTGCGAAGTAGTACTTGAAGCGGGTAAGCAGAGATTAGATAAGTGGAATTTGATGGGTAGACTTGGGAGCAAGGCTAGGTCATCGATAGGGCAATGTGCTGCATGGATGAGACCCGATCTTGTATATGTGAAGAAGCCAGTGTTCCAGTGTAGGTTTGAGCCACAGGATAACTTTTTCAATCCAATAATTCCATTACTTGATCCTAAAACAGAGCAGGATTATCTTTTTGAGTTACAGAATGATGATGGTAGTGTTGAGTTGTGTACTTATTTTGGTGGATTGTGCAAGATTGCGAAGGTGAATCAAAAGGCATTTGTTGATGATGTGGTGAATGCATATCAGAAATTGAGCGATGAGAAAAAGTCAAAATGTTTGGAGTTTCTGTTGACCAATCATCCGGTGGAATTGTTACATCCATATACTAAAGAGTGGAAGGCTAAGTTGGAAGAGATGGAGCTGGGTTGTgatgctcctgatgaagaagatgatgctattgttgatgatcctgaagaaaccgagattcttgattggattgaggatgaaggtagtgatgatgaagctaacattactaatgaggaggaggacgacgaagaggagctgattgacgatgatgatgttgatggcaatgaagaccaagatctaGTCATGGACATGGAAGAAAGCGAAGACGGGAAATATGATGGCAATGAAGACCAAGATCTAGTCATGGATATGGAAGAAAGCGAAGATGGGAAATATCAAGCCATGGATGAGGATACACTTACAGAAGAGGATGAGAAGGACTGGAACTGGAATGAGGAGTTTCAAAAAGCATTAAGTAGTGGAGAAGCAATGGAAAATCTGGCTAGGAAGACTCTTGAGTTCAATAAGAAGTTGAGTAGGACGCAAATGATGAACAAAGTAGAGGAAGAGACAGTGCCCTCACTAGATGGAGATGAAACTTCATTGAGAGGCAAGCGACCAAAGGTTGGTCAAGAAGAGTGGAAGTATATTGGGGTTGGTCCGTGGAGAAAAAGGATTAAGAAGAGCAAAATTCCACCAGAGCTATTTTTGCGGTCAGTTGTTAGACCATTCACTTACAGAAATCTTGTTAAAGAGATCGTTTTGACTAGGCATGCAATTTTGGATGGTGAAATTGGCAGGGGAGTTGAGAAAAAAGAGTAG 4002 0.4173 MKASVTNADFPRTPLFLKIVFFLFVALTFFFLGNHFSDGSHQLIFFSATAATSATVTISPNFNQFFNVSALIDPLPTPTQTPEPPPAPELRDAIKRFGILNDNGTMSDDFEVGHFDDDDDGDGVTEERGNDTASAPKKLAVAKFAMCPRSMSELIPCLDNADAIRRLKSTERGEKLERHCPEEGKRFNCLIPPPKGYRSPIPWPRSRDEVWYSNVPHSRLVEDKGGQNWISRGKDKFRFPGGGTQFIHGADQYLDHISEMVPDIKFGQNIRVALDVGCGVASFGAYLLSRNVITMSVAPKDVHENQIQFALERGVPAMIAAFATRRLLYPSQGFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEEVLEEQWEEMLNLTTRLCWKFVKKDGYVAIWQKPTDNSCYLNREAGTQPPLCDQSDDPDNVWYVNLKACISQLPEDGYGANVARWPARLHTPPERLQSIKFDAFISRKELFKAESKYWDEIIASYVRALHWKKMKLRNVMDMRAGFGGFAAALIDQNLDSWVMNVVPVSGSNTLPVIYDRGLIGVMHDWCEPFDTYPRTYDFLHAANLLSVEKKRCNVSSIMLEMDRILRPGGRAYIRDTLGIMDELVEIGKAIGWQMTLRDTAEGPHASYRVLLKLYLSLTLEYFTGVVVSGSAEAEYITVYSWWWWMVLEMDMRHFRSEFLPKTLNPSSTYLQFSPLRPFHKTPNLKFHSQKRFAVVSFSQNPKPISELSVLRRNPACSRDLRSYAGRSKKSGGEGSSSGRIEGYAEFRRRLKRNSRARSRKYAESLFYRLKNPRGGGNYPNNFTEDELQQIGLGYDRMVRFMEKDDPNLRHPYDWYKYGQYGPYSWRGVVVGDPVRGRFSDECVTLISEVKDHEEWEKIEQAEMAEEYAEKVKRLDQSKLRYFWVFVRHPRWRISEHPWQQWTLVCEVVLEAGKQRLDKWNLMGRLGSKARSSIGQCAAWMRPDLVYVKKPVFQCRFEPQDNFFNPIIPLLDPKTEQDYLFELQNDDGSVELCTYFGGLCKIAKVNQKAFVDDVVNAYQKLSDEKKSKCLEFLLTNHPVELLHPYTKEWKAKLEEMELGCDAPDEEDDAIVDDPEETEILDWIEDEGSDDEANITNEEEDDEEELIDDDDVDGNEDQDLVMDMEESEDGKYDGNEDQDLVMDMEESEDGKYQAMDEDTLTEEDEKDWNWNEEFQKALSSGEAMENLARKTLEFNKKLSRTQMMNKVEEETVPSLDGDETSLRGKRPKVGQEEWKYIGVGPWRKRIKKSKIPPELFLRSVVRPFTYRNLVKEIVLTRHAILDGEIGRGVEKKE 1333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01520 1333 MobiDBLite consensus disorder prediction 1124 1156 - -
Cca05g01520 1333 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 492 630 IPR029063 -
Cca05g01520 1333 MobiDBLite consensus disorder prediction 105 134 - -
Cca05g01520 1333 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 12 653 IPR004159 GO:0008168
Cca05g01520 1333 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 177 392 IPR029063 -
Cca05g01520 1333 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 153 653 IPR004159 GO:0008168
Cca05g01520 1333 PANTHER METHYLTRANSFERASE PMT12-RELATED 12 653 - -
Cca05g01520 1333 Gene3D Vaccinia Virus protein VP39 251 419 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01520 Cca-Chr5 34288087 34298035 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01520 - - ccaj:109795129 1246.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01520 05 34288087 34298035 Cca05g01520 05 34288087 34298035 ECH
Cca01g00371 01 4249272 4254823 Cca05g01520 05 34288087 34298035 PCT