Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00371 ATGGCAGGCGATTTTCTCCGAACACCCCTCACTCTCAAGATCGCCGCTTTCTCTCTCATTGCCGTCACATTCTTCTACTTCGGCAAGCACTGGTCCGATGGCTACCAGCAGCTCGTGTTCTTCACCACCCAACGCTCCGACCCGGATCCAAGTCCCAACCCTAACCCTAATTCCGTCGTGTCCACGTCACCCAATTACGGCAAATCCTTCAACCTCTCCGCTTTGATCGATCAGAACACCACCCAGCTGGAAAATGCGCTGCCGGTGCCGGCGCCGCCAGCAGACTCGGACTTAATTGAGAAACTGGGAGTTGTGAGTGAGAATGGCACTATGTCCGATGACTTTGAGGTGGGGGCTTTGGATCCGGGCATGGTGGAGCAATGGGTGAACGAGACGCAGGTTGAGGGCGAGGGTTCTTCTTCTTCTAATTTGGGATTTGCGATTAAGAAGTTTGGGTTGTGCCCGCCCGAGATGCGCGAGTATATACCGTGTTTGGACAACGAGGACGCGATTCGGAAGCTGCAATCGACGGAGAAAGGGGAGAGGTTCGAGCGGCATTGCCCTGAGGAAGGTCAAGGGTTGAATTGCTTGGTTCCTGCACCCAGAGGGTACCGAACCCCAATTCCGTGGCCCAGAAGCCGAGATGAGGTATGGTACAATAATGTTCCTCATACACGTCTTGTTGAAGATAAAGGTGGCCAAAACTGGATTTCCAGAGACAATGATAAGTTTAAGTTCCCGGGAGGAGGTACGCAGTTTATACACGGGGCAAATGAATACTTGGACCATATTGCTAAGATGATTCCTGATATTACATTTGGTAAGCATATAAGGGTTGTTCTTGATGTTGGCTGTGGAGTTGCTAGTTTTGGTGCGTACTTACTGTCACGGAATGTGGTTGCCATGTCTGTTGCTCCCAAGGATGTTCATGAGAATCAGATTCAGTTTGCTCTTGAGCGAGGTGTACCAGCAATGGCTGCAGCATTTGCGACTAGACGATTGTTATATCCAAGTCAAGCTTTTGACTTGATACATTGTTCACGCTGTAGAATTAATTGGACTCGAGATGATGGGATACTGCTGCTTGAAGTCAATAGGATGCTCAGAGCAGGAGGGTACTTTGTCTGGGCTGCCCAGCCAGTTTATAAGCATGAAGAAGTTTTAGAAGAACAATGGGAAGAGATGCTTAATCTCACCACTCGACTCTGCTGGAAGTTTTTGAAAAAAGATGGATACATTGCAATATGGCAAAAACCTACTGACAATATTTGCTATCTAGACCGTGAGGCAGGAACTAAACCTCCACTTTGTGACCCAAGTGATGACCCAGACAATGTTTGGTATGTTGATCTAAAAGCATGCATCTCTGAATTGCCTAAAAACGGATATGGAGCAAATCTTCCTGAATGGCCTGCACGTTTGCAAGCCCCACCAGATAGGCTTCAGAGCATAAAGCTAGATGCTTTCTCATCCAGAAATGAGCTTTTTAGGGCAGAATCTAAATACTGGAATGACATAATAGCAACCTATGTTCGTGCTTTACGCTGGAAGAAAATGAGATTAAGAAATGTTATGGACATGCGAGCAGGTTTTGGAGGATTTGCAGCAGCATTGATCGATCACAATCTTGACTGCTGGGTTATGAATGTCGTTCCTGTTAGTGGTCCAAACACCTTGCCTGTTATTTATGACCGTGGATTGATTGGAGTTATGCATGACTGGTGTGAGGCATTTGACACCTACCCAAGAACCTATGATTTACTGCATGCAGCAAACCTACTTTCCGTTGAGAGGAAAAGATGCAATGTCTCAACCATTATGCTTGAGATGGATCGGATACTAAGACCCGGTGGACGTGTATACATCCGTGATTCTCTTGAAATCATGGATGAACTTCAAGAGGTTGCCAAGGCAATAGGCTGGCACACGATGTTGCGAGACACAGAGGAGGGGCCTCATGCAAGTTATAGGGTGTTGGTTTGTGATAAGCACTTGCTACGTTCTTGA 2007 0.4704 MAGDFLRTPLTLKIAAFSLIAVTFFYFGKHWSDGYQQLVFFTTQRSDPDPSPNPNPNSVVSTSPNYGKSFNLSALIDQNTTQLENALPVPAPPADSDLIEKLGVVSENGTMSDDFEVGALDPGMVEQWVNETQVEGEGSSSSNLGFAIKKFGLCPPEMREYIPCLDNEDAIRKLQSTEKGERFERHCPEEGQGLNCLVPAPRGYRTPIPWPRSRDEVWYNNVPHTRLVEDKGGQNWISRDNDKFKFPGGGTQFIHGANEYLDHIAKMIPDITFGKHIRVVLDVGCGVASFGAYLLSRNVVAMSVAPKDVHENQIQFALERGVPAMAAAFATRRLLYPSQAFDLIHCSRCRINWTRDDGILLLEVNRMLRAGGYFVWAAQPVYKHEEVLEEQWEEMLNLTTRLCWKFLKKDGYIAIWQKPTDNICYLDREAGTKPPLCDPSDDPDNVWYVDLKACISELPKNGYGANLPEWPARLQAPPDRLQSIKLDAFSSRNELFRAESKYWNDIIATYVRALRWKKMRLRNVMDMRAGFGGFAAALIDHNLDCWVMNVVPVSGPNTLPVIYDRGLIGVMHDWCEAFDTYPRTYDLLHAANLLSVERKRCNVSTIMLEMDRILRPGGRVYIRDSLEIMDELQEVAKAIGWHTMLRDTEEGPHASYRVLVCDKHLLRS 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00371 668 CDD AdoMet_MTases 280 375 - -
Cca01g00371 668 Gene3D Vaccinia Virus protein VP39 257 423 IPR029063 -
Cca01g00371 668 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 184 400 IPR029063 -
Cca01g00371 668 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 12 666 IPR004159 GO:0008168
Cca01g00371 668 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 500 641 IPR029063 -
Cca01g00371 668 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 160 663 IPR004159 GO:0008168
Cca01g00371 668 PANTHER METHYLTRANSFERASE PMT12-RELATED 12 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00371 Cca-Chr1 4249272 4254823 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00371 - - gmx:100800414 1205.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00371 01 4249272 4254823 Cca05g01520 05 34288087 34298035 PCT