Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01508 ATGGCTGCCTCAGTCTCCACGGTTGGAGCTGTCAACGGAGCCCCACTGAGCTTAAATAGCTCTGGAGCTGGAGCTTCAGTTCCCAGTTCAGCCTTCTTTGGCAGCAGCTTGAAGAAGGTTATTGCCTCAAGGGTCCCTAGCAGCAAGGTTTCTTCCTCTGGAAATTTCAAAATTGTTGCTGCTGACAAAGAGATTGAGGAGACTCAGCAGACTGATAAGGACAGATGGAAGGGTCTTGCCTATGATATTTCAGATGACCAGCAAGACATTACAAGGGGGAAGGGTATGGTTGATTCCCTCTTCCAAGCTCCAATGGAAACTGGAACTCACTATGCAATCATGAGCTCTTATGAGTACCTTAGTACGGGACTTAAACAGTACAACTTGGATAACAACATGGATGGATTTTACATTGCTCCTGCTTTTATGGACAAGCTTGTTGTTCACATCACCAAGAACTTCATGACCCTGCCCAACATCAAGATTCCTCTTATTCTTGGTATCTGGGGAGGCAAAGGTCAAGGAAAATCCTTCCAATGCGAGCTTGTCTTTGCCAAGATGGGAATCAACCCTATCATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCAGGAGAGCCAGCAAAGTTGATCAGGCAAAGGTACCGTGAAGCTGCTGACATAATCAAGAAGGGGAAGATGTGCTGTCTCTTCATCAATGATCTTGACGCAGGAGCTGGTCGTCTTGGTGGAACCACTCAATACACTGTGAACAACCAGATGGTGAATGCCACCCTCATGAACATCGCTGATAACCCCACAAATGTTCAGCTCCCTGGTATGTACAACAAGGAAGACAACCCCCGTGTGCCCATCATTGTCACTGGTAACGATTTCTCAACACTCTATGCTCCTCTCATCCGTGATGGACGTATGGAGAAGTTCTACTGGGCACCTACAAGGGACGACCGAATTGGTGTCTGCAAAGGAATTTTCCGCAGTGACAATGTTCCTGGTGATGACATTGTCAAGCTTGTTGACACCTTCCCTGGCCAATCCATTGATTTCTTTGGTGCACTGAGGGCTAGAGTATACGATGATGAAGTAAGGAAGTGGATTAGTGGTGTTGGTGTTGATTTGATTGGGAAGAAGCTTGTGAACTCAAAGGAAGGACCTCCAACCTTTGACCAGCCCAAGATGACTTTGGCTAAGCTCTTGGAGTATGGTAACATGCTTGTCCAAGAACAAGAGAATGTGAAGAGAGTCCAGCTGGCAGACAAGTACTTGAGCGAGGCTGCTCTTGGTGATGCTAATCAAGATGCCATTAAGAGTGGATCATTCTACGGCAAAGCAGCCCAGCAAGTAAATATTCCCGTTCCTGAAGGTTGTACTGATCCAAATGCCAAAAACTTCGACCCAACTGCAAGAAGTGATGATGGAACCTGCCTATACAGTTTCTAA 1440 0.4639 MAASVSTVGAVNGAPLSLNSSGAGASVPSSAFFGSSLKKVIASRVPSSKVSSSGNFKIVAADKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPMETGTHYAIMSSYEYLSTGLKQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRSDNVPGDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDLIGKKLVNSKEGPPTFDQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANQDAIKSGSFYGKAAQQVNIPVPEGCTDPNAKNFDPTARSDDGTCLYSF 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01508 479 Gene3D - 313 425 - -
Cca05g01508 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 336 IPR027417 -
Cca05g01508 479 Pfam ATPase family associated with various cellular activities (AAA) 168 309 IPR003959 GO:0005524|GO:0016887
Cca05g01508 479 Gene3D - 128 312 IPR027417 -
Cca05g01508 479 PANTHER ATPASE, AAA-TYPE, CORE, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 1 479 - -
Cca05g01508 479 PANTHER - 1 479 IPR044960 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01508 Cca-Chr5 34148218 34151697 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01508 - - gmx:100806240 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01508 05 34148218 34151697 Cca01g01703 01 39442671 39447059 ECH
Cca01g01703 01 39442671 39447059 Cca05g01508 05 34148218 34151697 ECH
Cca05g01508 05 34148218 34151697 Cca05g01508 05 34148218 34151697 ECH