Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01703 ATGGCAGTCTCAGTTCCAACCGTTGGAGCCATTAACATGGCACCGTTGAAACTGAACGGCTCTAGCAGTGGAGTGACAAGCTCAACATTCTTTGGAACCATTTTGAAGAAAACCAGTTCTGTGAGTTCCAGCCAGAAAAGTTTGAGTGGGAATTTCAAGGTTTCTGCACAGATTGAATATGATGAGGAGAAGCAGACTTCAAAGGATAGATGGGGTGGACTTGCTTATGACATTTCAGATGACCAGCAGGATATCACTAGAGGGAAGGGAATGGTGGACACTCTCTTCCAAGCTCCCATGGAAAGTGGAACTCACTATGCTGTCATGAGTTCCTATGATTATATCAGTACTGGTCTTCGCCAGTACAATTTGGACAACACCATGGATGGCTTCTACATTGCTCCTGCATTTATGGACAAGATTGTTGTTCACATCACCAAGAACTTTTTGAACTTGCCAAATATTAAGGTTCCCCTTATTTTGGGTATTTGGGGAGGCAAAGGTCAGGGGAAATCATTTCAATGTGAGCTTGTCTTTGCCAAGATGGGAATCAACCCCATAATGATGAGTGCTGGAGAATTGGAAAGTGGAAATGCTGGAGAGCCTGCAAAGTTGATTAGGCAACGGTACCGCGAGGCAGCAGACATTATCAGAAAAGGAAAGATGTGTTGTCTCTTCATCAATGATCTTGATGCAGGAGCTGGTAGGATGGGTGGAACCACTCAATACACTGTCAACAACCAGATGGTGAATGCAACTCTCATGAACATTGCTGACAACCCAACCAATGTCCAACTTCCTGGTATGTACAACAAGGAGGAGAATCCTCGTGTTCCAATCATAGTCACTGGCAATGATTTCTCAACATTGTATGCTCCTCTCATTCGTGATGGACGAATGGAGAAGTTCTATTGGGCTCCTACTCGAGATGACAGAATTGGTGTCTGCCAAGGCATTTTCAGAACAGATGATGTTCCAAAGGAGGACATTATCAAGCTTGTTGACACCTTCCCTGGACAATCTATTGACTTCTTTGGTGCCCTGAGGGCCAGAGTCTATGATGATGAAGTCAGGAAGTGGATTTCTGGTGTTGGGGTGGAGAATGTTGGGAAAAAGCTGGTGAATTCAAAGGAGGGACCTCCAACTTTTGAGCAACCAAAGATGTCCCTTAACAAGCTCCTTGAGTATGGGAACATGCTTGTCCAAGAGCAAGAGAATGTGAAGAGGGTTCAGTTGGCCGACAAATACCTCAATGAGGCAGCTCTTGGAGAGGCAAATGAAGATGCCATGAAGACCGGAAACTTCTATGGTTAG 1314 0.4482 MAVSVPTVGAINMAPLKLNGSSSGVTSSTFFGTILKKTSSVSSSQKSLSGNFKVSAQIEYDEEKQTSKDRWGGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISTGLRQYNLDNTMDGFYIAPAFMDKIVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRTDDVPKEDIIKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVENVGKKLVNSKEGPPTFEQPKMSLNKLLEYGNMLVQEQENVKRVQLADKYLNEAALGEANEDAMKTGNFYG 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01703 437 PANTHER - 1 437 IPR044960 -
Cca01g01703 437 PANTHER RIBULOSE BISPHOSPHATE CARBOXYLASE/OXYGENASE ACTIVASE, CHLOROPLASTIC-LIKE ISOFORM X1 1 437 - -
Cca01g01703 437 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 333 IPR027417 -
Cca01g01703 437 Pfam ATPase family associated with various cellular activities (AAA) 163 304 IPR003959 GO:0005524|GO:0016887
Cca01g01703 437 Gene3D - 123 307 IPR027417 -
Cca01g01703 437 Gene3D - 308 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01703 Cca-Chr1 39442671 39447059 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01703 - - gmx:100795298 811.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01508 05 34148218 34151697 Cca01g01703 01 39442671 39447059 ECH
Cca01g01703 01 39442671 39447059 Cca05g01508 05 34148218 34151697 ECH
Cca01g01703 01 39442671 39447059 Cca01g01703 01 39442671 39447059 ECH