Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01496 ATGCCTTTCATTTCCAAAATTCAGCGCCAATCCGATTTCAACGTCTTCGATTCCCAAACTCCTATCGTAATAGACAACGGCGCCTCCTATTTCCGCATAGGGTGGGCGGGAGAGTCTGAACCTCGTGTTGTGTTCCGCAACATCGTGCAAAGGCCACGCCATAAAGTAACTGGGGAAACTGTCACTATTGTGGGTGACCATGATCCAGCATTACTGAAATACTTTGACTGCACTCGCTCAGGGCCACGCTCTGCATTTGACAGCAATGTTGTTTACCAGTTCGAAACAATGGAATATATTCTTGATTTTGGATTTGACCGCATGGGTGCAAATGGAATGGAGATTGACCATCCTGTCCTGATCACAGAATGTGTATGCAACCCAGTTCAATCTCGTAGTAAAATGGCTGAACTTCTTTTTGAGACTTACGGAGTTCCATCAATTGCCTTTGGTGTTGATGTGGCATTCAGCTATAAATATAATCAACAACAAGGAGTTTGTGCTAAAGATGGTCTTGCTTTGTGTCCTGGATTCACCACAACCCATGTGATTCCGTTTGTAGATGGGGAGCCTGTTTACAAAGGAAGCTGTCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTGAAGCAACTTCTTTCACTTAAATATCCTTATCATTTGACTAGATTTACATGGGAAAGGGTTGAAGACCTGAAGATGGAACATTGTTACATTGCACCAGATTATCTTTCTGAAGCTCGGTTGTTTCAGAAAGGAGCCAAGGAAGCTGAAGAAAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCACCCCCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCAAGAAAGGCAGCAATAAAAGAGAAACAAGGTCAAAGGCTTCGAGAAATGGCTGAGGCAAAGAGGTCTTCTAAGATCAATGAACTGGAAAATGAATTGCACGCTTTAGAGTTTCTTTTGCATCAGCTTGACCAAGTAGAAGAGAGTGAGATTCCATCTTTCCTGGCAGAAACTGGCTATGTTTCTAGGCAGGAGATTGAATCAGCACGTAATAAAGTTATGCAATCTTTACGGAAAGTAAAAGGTGAACCAAAGAATGAACAAGCTGAAACTGAAAAGGCTGATCTTGCGGCTAATGAGAAGTATTCTCTTATTAACATTCCTGATGACATGTTGACGCCAGAACAGCTCAATGAAAAGAAGAAACAGTTGTCACTCAAATCTATGGCTGAAGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAACGAGAGAGACAACAACAGCTAGAGGAGGAGAAACGCCTAGAGAACCCGGAGCTTTACTTGGAACAATTACATACCAGATACAAAGACCTTTCAGAAAGAGTTGACCAACAAAAACGACTTAAGACAAACGGAGGCCATTCAAATGGAAATAATCTGTCCGGTGGTGTTGGCCGTGGTGAAAGACTAAATGCTGCTCAGAGGGAACGGATGCGTCTCCTGACAACTGCAGCTTTTGATCGTGGTAAAGGTGAAGATACGTTTGGTGTCAAAGATGAAGATTGGGAACTTTACAAATTGATGAGCAAAGATTATGCTAACGATGATGAGGAGGGACCTGATGAGGACGAGGCAGAGCTTGCCCGCATCTCTTCTAGGCTCCAGGAGTTGGATCCAACATTTATACCCAAGTTAGATGCTGGTTTTTCTCAACCTGCTGAGGTGCCGCGTTTTAAACCTCTGACCAAAGAAGATTTTCAGATTTTTCTTGGGGTGGAAAGATTCAGATGTCCTGAAATATTGTTTAATCCAAACTGGATTGGGGTTGATCAGGTAGGATTAGATGAAATGGCTGGGGTGTCAATAAGGAGGTTACCATACAAGGATGAAAGCTTGGAAGAGAGACTGACCAGTTCCATACTTGTTACTGGTGGAAGTTCTCTTTTCCCTGGAATAGTTGAACGCCTGGAAGCTGGAATTCGGATGATTAGACCATGTGGCTCACCTATAAAAATAGTGAGAGCATTGGATCCAGTCATGGATGCATGGCGTGGGGCTGCTTCCTTTGCCTCAGACCCACAGTTCCATACGCAAACTTTCAGTAGACTGGATTATTATGAAAAAGGTGAAGACTGGCTTCGCAATTATCAGCTGCAGTATACAGTGTAA 2172 0.4342 MPFISKIQRQSDFNVFDSQTPIVIDNGASYFRIGWAGESEPRVVFRNIVQRPRHKVTGETVTIVGDHDPALLKYFDCTRSGPRSAFDSNVVYQFETMEYILDFGFDRMGANGMEIDHPVLITECVCNPVQSRSKMAELLFETYGVPSIAFGVDVAFSYKYNQQQGVCAKDGLALCPGFTTTHVIPFVDGEPVYKGSCRTNIGGFHVTDYLKQLLSLKYPYHLTRFTWERVEDLKMEHCYIAPDYLSEARLFQKGAKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIKEKQGQRLREMAEAKRSSKINELENELHALEFLLHQLDQVEESEIPSFLAETGYVSRQEIESARNKVMQSLRKVKGEPKNEQAETEKADLAANEKYSLINIPDDMLTPEQLNEKKKQLSLKSMAEGRQRLKQKRYEEELERERQQQLEEEKRLENPELYLEQLHTRYKDLSERVDQQKRLKTNGGHSNGNNLSGGVGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGVKDEDWELYKLMSKDYANDDEEGPDEDEAELARISSRLQELDPTFIPKLDAGFSQPAEVPRFKPLTKEDFQIFLGVERFRCPEILFNPNWIGVDQVGLDEMAGVSIRRLPYKDESLEERLTSSILVTGGSSLFPGIVERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGAASFASDPQFHTQTFSRLDYYEKGEDWLRNYQLQYTV 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01496 723 SUPERFAMILY Actin-like ATPase domain 170 716 IPR043129 -
Cca05g01496 723 Pfam Actin 17 268 IPR004000 -
Cca05g01496 723 Pfam Actin 588 715 IPR004000 -
Cca05g01496 723 CDD NBD_sugar-kinase_HSP70_actin 22 202 - -
Cca05g01496 723 SMART actin_3 19 720 IPR004000 -
Cca05g01496 723 MobiDBLite consensus disorder prediction 402 426 - -
Cca05g01496 723 Coils Coil 416 445 - -
Cca05g01496 723 Gene3D Actin; Chain A, domain 4 203 256 - -
Cca05g01496 723 PANTHER ACTIN-RELATED PROTEIN 5 18 715 IPR027664 -
Cca05g01496 723 Coils Coil 449 469 - -
Cca05g01496 723 SUPERFAMILY Actin-like ATPase domain 18 158 IPR043129 -
Cca05g01496 723 Gene3D Actin; Chain A, domain 4 560 612 - -
Cca05g01496 723 PANTHER ACTIN 18 715 IPR004000 -
Cca05g01496 723 Gene3D - 16 170 - -
Cca05g01496 723 Gene3D - 613 682 - -
Cca05g01496 723 Gene3D - 174 202 - -
Cca05g01496 723 Coils Coil 309 332 - -
Cca05g01496 723 Gene3D - 683 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01496 Cca-Chr5 33917790 33923265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01496 589 710 Miscellaneous Gene Families AT2G42100 32.787 3.38e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01496 K11672 - gmx:100804305 1282.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01496 05 33917790 33923265 Cca05g01496 05 33917790 33923265 ECH
Cca01g00407 01 4823269 4829950 Cca05g01496 05 33917790 33923265 PCT