Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00407 ATGACCCATTCGGGTTACCCGACCGGGTCGGGGCTCACCATGTCTGTTACTTATGTTGTTCACCATTTGCAGAGGTTGTCGAGTCGCAGGAACACAAACCAAACTCACTTCTTCTTCTTCGTTCTAACCGACATAATGCCCTTCATCTCCAAAATTCAGCGCCAATCTGATTACACTCACTTCGGTTCCGCCACTCCCATCGTCATCGACAATGGCGCCTCCTATTTCCGCATTGGATGGGCAGGCGAGACTCAACCTCGTGTTGTTTTCCGCAACATTGTCCAGAGGCCACGCCACAAAACCACTGGAGAAACTGTCACTATTGTTGGCGACCATGATCCAGCATTAATGAAATACTTTGACTGTACTCGTTCTGGACCCCGCTCGGCATTTGACAGCAATGTTGTTTTTCAGTTTGAAATAATGGAATACATTCTGGACTTTGCATTTGATCGGATGGGAGCAACAGGATCAGAGATTGATCATCCTGTCCTGATCACAGAATGTGTATGCAACCCAGTTCAGTCCCGCAGTAAAATGGGAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGCGTTGACGCAGCATTCAGCTATAAATATAATCAACAACAAGGAGTTTGTGATAAAGATGGTCTTGCTATGTGTCCTGGATTCACTACAACTCATGTGATTCCGTTTGTAGATGGAGAGCCTATTTATAAAGGATGCTGCCGTACTAATATTGGTGGATTCCATGTGACTGATTATTTAAAGCAACTTCTTTCACTTAAATATCCTTATCATATGTCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAAATGGAACACTGTTATATTGCACTGGACTATGCTTCTGAAGCTCGGTTGTTTCAGAAAGGTGCTAAGGAGGCTGAAGAGAAAACCAGATGTTGGCAGCTCCCTTGGGTTCCACCCCCAACTGAGGAGCCTCCTTCTGAGGAAGAGATTGCTAGAAAGGCAGCAATAAGAGAGAAACAAGGTCAAAGGTTACGAGAAATGGCCGAGGCAAAGAGGTCATCTAGAATAAACGAATTGGAAAATGAATTGCATGGTTTGGAATTTCTTTTAAAACAGCTTGAACAAGTTGAAGATAGTGAAATTCCATCTTTCCTAGCAGAGACTGGTTATGTCTCTAGGCAGGAGATAGAATCTGCCCGCATTAAAGTTATGCAATCCTTAAGGAAAGCAAAAGGTGAACCAAAGAATGATCAAGCTGAAACTGAAAAGGCCAGCCCTAATGCTAGTGAGAAGTATTCTCTTATAAACATCCCTGATGACATCCTCACCCCAGACCAGCTTGTTGAAAAGAAGAAACAGTTGTCACTGAAATCCATGTCTGAAGGGCGGCAGCGATTAAAGCAGAGGCGTTATGAAGAGGAATTGGAGCGAGAAAGGAAACAGCAGCTAGAGGAGGAGAGACGCCTAGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCAAGATACAAAGACCTTTCGGAGAGAGTGGACCAACGAAAACGGCTCAAGACAAATGGAGGCCATTCTAACGGAAATAATTTGTCTGGTGGCATCGGTCGTGGTGAGAGACTGAATGCCGCTCAAAGGGAGAGAATGCGCCTGTTGACAACTGCTGCATTTGATCGTGGTAAGGGTGAGGATACATTTGGTGCCAAAGATGAAGATTGGCACCTTTACAAATTGATGAGCAAAgataatgatgatggtgaggaaggagcagatgaggatgatgCAGAGCTAGCCCGCATCTCTTCAAGGCTACAGGACTTGGATCCAACATTTGTGCCCAAGTCAGAAACAGGTAGCTCTCAACCAGGTGAGGCGCCACGTGTCCGGCCTCTGAGCAAAGAAGATTTTCAGATTGTTTTTGGTGTTGAAAGGTTCAGATGCCCAGAAATTTTGTTCAATCCGAAGTGGATAGCAGTTGATGAGGTAGGGTTGGATGAGATGGCAGGAGTTTCAATAAGGAGGTTATCATGTAAAGATGAAGGGTTGGAAGAGAGACTGACTAGCTCCATACTTGTGACTGGTGGAAGTTCTCTCTTCCCCGGCATCATCGAACGCCTTGAGGCCAGAATCCGGATGATTCGGCCGTGTGGATCGCCCATAAAAATAGTTAGAGCACTGGATCCTGTTTTGGATGCATGGCGAGGGGCTGCTATGTTTGCATCAGCCCCACAATTCCATACACAAACTTTCAGTAGGATGGACTATTTTGAAAAAGGTGAAGATTGGCTCCGCAATTATCAGCTCAAATATTCATTGTAA 2304 0.4405 MTHSGYPTGSGLTMSVTYVVHHLQRLSSRRNTNQTHFFFFVLTDIMPFISKIQRQSDYTHFGSATPIVIDNGASYFRIGWAGETQPRVVFRNIVQRPRHKTTGETVTIVGDHDPALMKYFDCTRSGPRSAFDSNVVFQFEIMEYILDFAFDRMGATGSEIDHPVLITECVCNPVQSRSKMGELLFETYGVPSIAFGVDAAFSYKYNQQQGVCDKDGLAMCPGFTTTHVIPFVDGEPIYKGCCRTNIGGFHVTDYLKQLLSLKYPYHMSRFTWEKVEDLKMEHCYIALDYASEARLFQKGAKEAEEKTRCWQLPWVPPPTEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSRINELENELHGLEFLLKQLEQVEDSEIPSFLAETGYVSRQEIESARIKVMQSLRKAKGEPKNDQAETEKASPNASEKYSLINIPDDILTPDQLVEKKKQLSLKSMSEGRQRLKQRRYEEELERERKQQLEEERRLENPELYLEQLRARYKDLSERVDQRKRLKTNGGHSNGNNLSGGIGRGERLNAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWHLYKLMSKDNDDGEEGADEDDAELARISSRLQDLDPTFVPKSETGSSQPGEAPRVRPLSKEDFQIVFGVERFRCPEILFNPKWIAVDEVGLDEMAGVSIRRLSCKDEGLEERLTSSILVTGGSSLFPGIIERLEARIRMIRPCGSPIKIVRALDPVLDAWRGAAMFASAPQFHTQTFSRMDYFEKGEDWLRNYQLKYSL 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00407 767 MobiDBLite consensus disorder prediction 603 624 - -
Cca01g00407 767 CDD NBD_sugar-kinase_HSP70_actin 67 247 - -
Cca01g00407 767 SUPERFAMILY Actin-like ATPase domain 64 204 IPR043129 -
Cca01g00407 767 SUPERFAMILY Actin-like ATPase domain 215 760 IPR043129 -
Cca01g00407 767 Gene3D Actin; Chain A, domain 4 628 656 - -
Cca01g00407 767 Pfam Actin 632 759 IPR004000 -
Cca01g00407 767 Pfam Actin 64 313 IPR004000 -
Cca01g00407 767 PANTHER ACTIN-RELATED PROTEIN 5 56 759 IPR027664 -
Cca01g00407 767 Gene3D - 221 247 - -
Cca01g00407 767 MobiDBLite consensus disorder prediction 512 532 - -
Cca01g00407 767 PANTHER ACTIN 56 759 IPR004000 -
Cca01g00407 767 Coils Coil 354 374 - -
Cca01g00407 767 MobiDBLite consensus disorder prediction 405 429 - -
Cca01g00407 767 Gene3D - 63 215 - -
Cca01g00407 767 Coils Coil 464 486 - -
Cca01g00407 767 MobiDBLite consensus disorder prediction 451 471 - -
Cca01g00407 767 SMART actin_3 64 764 IPR004000 -
Cca01g00407 767 Coils Coil 494 514 - -
Cca01g00407 767 Gene3D - 657 726 - -
Cca01g00407 767 Gene3D - 727 755 - -
Cca01g00407 767 Gene3D Actin; Chain A, domain 4 248 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00407 Cca-Chr1 4823269 4829950 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00407 633 754 Miscellaneous Gene Families AT3G53750 32.787 3.74e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00407 K11672 - gmx:100808396 1267.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00407 01 4823269 4829950 Cca05g01496 05 33917790 33923265 PCT