Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01492 ATGGCTCACTGCTATAACAAGGATAATGACACAAGTGCATCTCAATTAAGTTGGTGGTATGTAGATATATCTTACCAAGAACTTAAAAAGGGAAGTTACAAAGTGAAAAGCTCAGATGATACTTTCATTTGTCCATACTGTCCTGAGAGAAAACAAGATTATAAGTACAGGGAACTCCTTAATCATGCTTCTGGAGTTGGTCGGAGTAGTTCAGAAAAGAGAACTGCAAAAGAAAAGGCTAATCATCTGGCCTTAGTGAAATATTTGGAAAAGGATCTCGCGCATATGGATGGCCCATCAAAACCTGTAGATAAAGGTGCCAAATTAAGCCTAGGAGAAACAGCAATGACTCACGGCTCTAATAAGGATACTGATATAAGTGCATCTCAAATAAGTTGGTGGTATGTAGATGCATCTTATGAAGAACTCAAAAGTGGAAGTCACAATGTGAAAACCTCAGATGTGACTTTCATCTGTCCATACTGCCCTAGGAGAAAACAGGATTATTTGTACAGGGAACTCCTAGAACATGCTTATATGGTGGGTCGGAGTAGTTCTGAAAAGAGAAGTGCCAGAGAGAGGGCCAATCATCTCGCTTTAGTGAAATATTTGGAAAAAGATCTTACTGTTATGGATGGCCCATCAAAACCTCTAGACAAAGGTACCAAAGTATTAAGCCTAGGACAAACTGTAATGCCTCAATGCTCTAAAAAGGAGACTGATATGAGCGCATCTCAAATAAATTGGTGGTATGTAGATAAATTTTACAAAGAACTCAAAAACAGAAATCACATTGTGCAAACTTCAGATGAGACTTTGTCCTGTCCATACTGCCCTAAAATGAAAAAACAGGATTATGTGTACCGGGAACTTCTTGAACATGCTTCTGGGGTGGGTCAGAGTAGTTCACAAAAGAGAAGTGTCAGAGAGAAGGCCACTCATCTGGCACTAATGAAATATTTGAAAAATGATCTTATGCATATGAATTGTTCATCAAAGTCTGTAAATGAAGGTAACCCTCCTGTTAACATGGTGGGTCAAAGTAGTTCACAAGACAGAACTGCCAAAGAAGACACAACTCATTTGGCTTTAGCAAAATACTTGAAAAAGGATCTTACTAATGTGAGTGCTCCATCAAAACCTGTATATGAAGGAACCATAATAGTAAGGCCAAGAGAAACTGTATCTGGTTGCTGCTCTAGCAAAGATAGCAATATAAGTTCATCTCAATTTGGGTCGTATGTAGATAAATCTTATGAAGAACTCAAAAAGGGAAGTCACAATGTGAAAACCACTGATGAGACTTTCACATGTCCATACTGCCCTAATAAAAAGATAAAACGGGATTATGTGTACAGGGAAATCCTTGAACATGCTTCTGGGGTGGGTCACAGTAGCTCACAGAAAAGAAGTCTCATTGAAAAGGCTAATCATCTGGCTTTAGTAAAATATTTGAAAAAGGATCTTATGAATGTGAGTGCTCCATGTCCATCAAAACCTATGGATCAAGGCACCATCACAATAAGGCCAGGAGAAACAATGGGTCACTTCTCTCATAAAGATACTAATATAAGGGAATCTCAAATAAGTTGGTGGTATGTAGATAAAACCTATGAAGCACTGAAAAAGGGAAGTCACAATGTGAAAACCTCAGAGAAGACTTATTCATGTCCATATTGCCCTAATAAAAAGAGAAAACGAGATTATGTTTACAGGGAAATTCTTGAACATGCTTCCGGGGTTGGTCAGAGTAGTTCACAAAAGAGAAGTGCCTTTGAAAAGGCTAATCATCTGGCTTTAATGAAATATTTGGAAAAGGATCTTATGATCATAGATAGTCCACCAAAAACTGCAGATGAAGGCAGTCCTCCTTTCAATTCTGAGAAACAGTTTGTGTGGCCATGGACTGGGATTGTAGTTAATATTCCTACTAGACAAACAGAAGATGGACGATTTGTTGGGGAAAGTGGTTCCAAGCTAAGGGATGAATACCGAAGTAGGGGATTTAATCCACGTAGAGTCCGCACTCTTACAAATTTTTGGGGTCACTCTGGAACTGCCGTTGTGGAATTCAATAAAAATTGGACAGGATTAGATAGTGCTTTGGCATTTGAAAGAGCATATGAATTAGATCATCATGGGAAAAAAGACTGGTTTGCTAATACTTGGCAGAAGTCCGGTATTTATGCATGGGTTGCTCAAGCTGATGACTACAAGATGAACAATATCATTGGGGAACGATTGCGGAAAATGGGGGATATCAGAACAATACCTGAACTTATGGAAGATGAAGCTCGGAAGCATGATATACTTGTGTCCAGTTTGAATAATTCTCTTCAAGTCAAGAAGAAACAATTAAAGGAGGTGGAAGAAAAATACAATGAGTCTTCATGCCGCATGGACATTGTAATGGGAGAAGTAGATAAGCTCACTCAAAATCACAATCAAGAGATGAAGAAGATACATTCAAGTGCAACTCAACACTTTCAGAATATTTTTAATGGTCATGAAAGGCTCAAGTTACAACTGGAATCTCAAAAAAGAGAACTTGAGTTGCGGAGAATTGAATTGGAAAAACGTGAGGCACGTAATGAAAGTGAAAGAAAAAAGTTGGAAGATGAGATGATGGAGAATGCATTGAGAAACAGCTCTCTGGAAATGGCTATTCTGGAGCAACATAAAGCCGGTGAAAATGTTTTGAAACTAGCTGCAGATCAAAAGCGGCAAAAAGAACAACTCCATGCTAAAATCATCCAGCTTGAAAAACAACTGGATGTTAAACAAAATCTAGAATTGGAGATTCAACAACTGAAAGGAAAATTAAATTTCATGAACCACATGGAAGGTGATGGAGACTCGGAAGTTCTGAATAAGGTGGATGTTATACATAAGGTATTAAGAGAAAAGGAACAATCGCTACGAGATTTAGATGCCTTGAACCAAACACTGATTATAAAAGAGCGTCAGAGCAATGATGAGCTACAGGAAGCTCGAAAAGCATTGATTAATGGCATTAAAGAGATATCTTGTCGTGCTAATGTCggtgtgaagagaatgggggagcttgatattagaccattccttgaagctatgaaggaaaaatataatgatgaggatgcagaagatagagcttcagaactgtgttcgctgtgggaagagtatattaaggatccagactggcatccatataaaattactataattgaaggGAAACATCAGgaaatcatagatgatggagatgaaaagttgaaaggactgaaaaatgagatgggtgaagcagtctacaaagctgtggtgacagctttgacggagataaatacatataatccaagtgggcggtatataaccactgaattgtggaattatgaagagggaaagacagctaccttacaagaagGAGTAAAATTGTTATTGATGCAATGGAATCTACATAAACAAAGACGGGGGACGATGTGA 3456 0.3446 MAHCYNKDNDTSASQLSWWYVDISYQELKKGSYKVKSSDDTFICPYCPERKQDYKYRELLNHASGVGRSSSEKRTAKEKANHLALVKYLEKDLAHMDGPSKPVDKGAKLSLGETAMTHGSNKDTDISASQISWWYVDASYEELKSGSHNVKTSDVTFICPYCPRRKQDYLYRELLEHAYMVGRSSSEKRSARERANHLALVKYLEKDLTVMDGPSKPLDKGTKVLSLGQTVMPQCSKKETDMSASQINWWYVDKFYKELKNRNHIVQTSDETLSCPYCPKMKKQDYVYRELLEHASGVGQSSSQKRSVREKATHLALMKYLKNDLMHMNCSSKSVNEGNPPVNMVGQSSSQDRTAKEDTTHLALAKYLKKDLTNVSAPSKPVYEGTIIVRPRETVSGCCSSKDSNISSSQFGSYVDKSYEELKKGSHNVKTTDETFTCPYCPNKKIKRDYVYREILEHASGVGHSSSQKRSLIEKANHLALVKYLKKDLMNVSAPCPSKPMDQGTITIRPGETMGHFSHKDTNIRESQISWWYVDKTYEALKKGSHNVKTSEKTYSCPYCPNKKRKRDYVYREILEHASGVGQSSSQKRSAFEKANHLALMKYLEKDLMIIDSPPKTADEGSPPFNSEKQFVWPWTGIVVNIPTRQTEDGRFVGESGSKLRDEYRSRGFNPRRVRTLTNFWGHSGTAVVEFNKNWTGLDSALAFERAYELDHHGKKDWFANTWQKSGIYAWVAQADDYKMNNIIGERLRKMGDIRTIPELMEDEARKHDILVSSLNNSLQVKKKQLKEVEEKYNESSCRMDIVMGEVDKLTQNHNQEMKKIHSSATQHFQNIFNGHERLKLQLESQKRELELRRIELEKREARNESERKKLEDEMMENALRNSSLEMAILEQHKAGENVLKLAADQKRQKEQLHAKIIQLEKQLDVKQNLELEIQQLKGKLNFMNHMEGDGDSEVLNKVDVIHKVLREKEQSLRDLDALNQTLIIKERQSNDELQEARKALINGIKEISCRANVGVKRMGELDIRPFLEAMKEKYNDEDAEDRASELCSLWEEYIKDPDWHPYKITIIEGKHQEIIDDGDEKLKGLKNEMGEAVYKAVVTALTEINTYNPSGRYITTELWNYEEGKTATLQEGVKLLLMQWNLHKQRRGTM 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01492 1151 Coils Coil 962 982 - -
Cca05g01492 1151 CDD RRM_like_XS 631 738 IPR005380 GO:0031047
Cca05g01492 1151 Coils Coil 833 877 - -
Cca05g01492 1151 Coils Coil 772 799 - -
Cca05g01492 1151 Gene3D XS domain 625 794 IPR038588 -
Cca05g01492 1151 MobiDBLite consensus disorder prediction 333 353 - -
Cca05g01492 1151 Pfam XS zinc finger domain 557 600 IPR005381 GO:0031047
Cca05g01492 1151 Pfam XS zinc finger domain 275 317 IPR005381 GO:0031047
Cca05g01492 1151 Pfam XS zinc finger domain 438 482 IPR005381 GO:0031047
Cca05g01492 1151 Pfam XS zinc finger domain 159 201 IPR005381 GO:0031047
Cca05g01492 1151 Pfam XS zinc finger domain 44 86 IPR005381 GO:0031047
Cca05g01492 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 399 445 IPR045177 GO:0080188
Cca05g01492 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 345 384 IPR045177 GO:0080188
Cca05g01492 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 447 503 IPR045177 GO:0080188
Cca05g01492 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 232 280 IPR045177 GO:0080188
Cca05g01492 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 564 1151 IPR045177 GO:0080188
Cca05g01492 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 514 563 IPR045177 GO:0080188
Cca05g01492 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 116 166 IPR045177 GO:0080188
Cca05g01492 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 281 344 IPR045177 GO:0080188
Cca05g01492 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 1 51 IPR045177 GO:0080188
Cca05g01492 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 50 107 IPR045177 GO:0080188
Cca05g01492 1151 PANTHER RIBONUCLEASE P SUBUNIT P38 165 223 IPR045177 GO:0080188
Cca05g01492 1151 MobiDBLite consensus disorder prediction 333 356 - -
Cca05g01492 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 281 344 - -
Cca05g01492 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 345 384 - -
Cca05g01492 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 447 503 - -
Cca05g01492 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 165 223 - -
Cca05g01492 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 564 1151 - -
Cca05g01492 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 514 563 - -
Cca05g01492 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 232 280 - -
Cca05g01492 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 116 166 - -
Cca05g01492 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 50 107 - -
Cca05g01492 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1 51 - -
Cca05g01492 1151 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 399 445 - -
Cca05g01492 1151 Pfam XS domain 628 739 IPR005380 GO:0031047
Cca05g01492 1151 Pfam XH domain 1017 1146 IPR005379 -
Cca05g01492 1151 Coils Coil 903 947 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01492 Cca-Chr5 33871351 33881052 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01492 - - gmx:100790814 1965.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01492 05 33871351 33881052 Cca05g01492 05 33871351 33881052 ECH
Cca01g00411 01 4896550 4903859 Cca05g01492 05 33871351 33881052 PCT