Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00411 ATGGCTCACAGCAGCTCTGATGAGGATACTGATATCAGTGACTCTGAAATTAGTGAGTATGAAGATAAATCTTATGAAGAACTGAAAAATGGAAGGCAGAATGTGAAAACCTCGGATGAGACTTTCACCTGTCCATATTGCCCTAAAAAGAGAAAACGGGACTATTTGTACAAGGAGCTCCTTCAACATGCTTCTGGGGTGGGTCAGAGTAGTTCACAAAAGAGAAAAGCTAGAGACAAGGCTAATCATTTGGCCTTAGTGAAGTATTTGGAAAAGGATCTCATGAATGTAGATGTTCCATCAAAAGATTCAAAACCCGAAGATGAAAGTGATCCTTCTGTTAATTCTGATGAGCAGTTTGTGTGGCCTTGGATTGGAATTGTTGTTAATATTCCTACTAGACGGTCAGAAGATGGACGATGTGTTGGCGAGAGTGGTTCCAGGCTGAGGGATGAGTACAGAAGCAGGGGTTTCAATCCGGTTCGAGTCAATCCTCTGTGGAATTTCCGGGGTCACTCTGGAACTGCTCTTGTGGAATTCAATAAAAACTGGCCAGGGTTAGATAATGCATTGGCATTTGAAAGAGCATATGAATTAGATCAGCATGGGAAAAAGGATTGGTTTGCTAATTCTGGGCAGAAGTCTGGTCTTTATGCATGGGTTGCCAGAGCAGATGACTACAAATCAAACTATATCTATGGGGAACATCTGCGAAAGATGGGTGATGTCAAAACCATATCCGAGCTTATGGAAGAAGAAGCTCGAAAGCAGGATAAACTTGTGTCCAATTTGACTAACATTATTCAGATCAAGAACAAGCACTTAAAAGAGATGGAAGTGAGATGCCATGAGACCACGGACAAAATGAACCTTGCTATGATGGAAAAAGAAAAACTCATTCAAGCTTATAATGAAGAGATAAAGAAAATACAGTTTAGTGCTAGGGATCACTTCCAAAGGATTTTTACTGATCATGAAAAGCTTAAATTGCAATTGGAATCTCATAAAAATGAGCTCGAGTTGCGGAAAATTGAATTGGAAAAACGTGAGGCGCATAATGAAAGTGAAAGAAAAAAGTTGGCTGAAGAAATTGAGGAGAATGCAACAAAAAATAGCTCTCTTGAGATGGCTTCTTTGGAGCAAAGGAAAGCTGGTGAAAATGTTATGAAACTGGCTGAAGATCAAAAGAGGCAAAAAGAACAACTCCATGCTAAAATCTTTCAGCTTCAAAAACAACTTGATATGAAACAAGAGTTGGAGTTGGAAATTCAACAATTAAAAGGAAGATTAAGTGTGTTGAAGCACATGGAAGATGATGAAGATGTAGAAATTCTGAAGAAGGTAGATACATTACACGAGGAATTAAGAGATAAGGAACAGTCACTTCAAGACATAGATGCATTGAATCAAACACTAATCATTAAAGAGCGCGAGAGTAATGATGAACTGCAAGAAGCTCGACAAGCATTGGTTGATGGCATTAAAGAGTTACAATCTCATGGTAATATTCgtttgaagagaatgggggaacttgacactagaccattccttgaagcaatgaagaaaagatataatgaggaagaagctgaagagagggcttcagaactgtgttcattgtgggaagagtatctaaaggatccagattggcatccattcaaagttatcatggttgaagggaaagaaaagGAAATTATTAGAGACGACGATGAAAAGCTGAATGGGTTGAAAAATGACTTGGGTGAAGGGGCATACAAAGCAGTGGTGGAAGCATTGTTAGAGATAAATGAACATAATCCTAGTGGGCGATACTTAACCTCAGTATTATGGAACTATAAACAGGGAAGGAGAGCCACTCTGAAAGAAGGAGTACAAGTTCTGTTGAATCAATGGAAAGTTCTTAAACGCAAGAGGGGACTGACATGA 1923 0.3552 MAHSSSDEDTDISDSEISEYEDKSYEELKNGRQNVKTSDETFTCPYCPKKRKRDYLYKELLQHASGVGQSSSQKRKARDKANHLALVKYLEKDLMNVDVPSKDSKPEDESDPSVNSDEQFVWPWIGIVVNIPTRRSEDGRCVGESGSRLRDEYRSRGFNPVRVNPLWNFRGHSGTALVEFNKNWPGLDNALAFERAYELDQHGKKDWFANSGQKSGLYAWVARADDYKSNYIYGEHLRKMGDVKTISELMEEEARKQDKLVSNLTNIIQIKNKHLKEMEVRCHETTDKMNLAMMEKEKLIQAYNEEIKKIQFSARDHFQRIFTDHEKLKLQLESHKNELELRKIELEKREAHNESERKKLAEEIEENATKNSSLEMASLEQRKAGENVMKLAEDQKRQKEQLHAKIFQLQKQLDMKQELELEIQQLKGRLSVLKHMEDDEDVEILKKVDTLHEELRDKEQSLQDIDALNQTLIIKERESNDELQEARQALVDGIKELQSHGNIRLKRMGELDTRPFLEAMKKRYNEEEAEERASELCSLWEEYLKDPDWHPFKVIMVEGKEKEIIRDDDEKLNGLKNDLGEGAYKAVVEALLEINEHNPSGRYLTSVLWNYKQGRRATLKEGVQVLLNQWKVLKRKRGLT 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00411 640 Pfam XH domain 506 636 IPR005379 -
Cca01g00411 640 MobiDBLite consensus disorder prediction 350 369 - -
Cca01g00411 640 CDD RRM_like_XS 120 227 IPR005380 GO:0031047
Cca01g00411 640 Coils Coil 325 366 - -
Cca01g00411 640 Coils Coil 480 500 - -
Cca01g00411 640 Pfam XS zinc finger domain 44 87 IPR005381 GO:0031047
Cca01g00411 640 MobiDBLite consensus disorder prediction 1 43 - -
Cca01g00411 640 MobiDBLite consensus disorder prediction 17 34 - -
Cca01g00411 640 Coils Coil 392 436 - -
Cca01g00411 640 Gene3D XS domain 113 283 IPR038588 -
Cca01g00411 640 Coils Coil 448 468 - -
Cca01g00411 640 Pfam XS domain 117 229 IPR005380 GO:0031047
Cca01g00411 640 MobiDBLite consensus disorder prediction 350 377 - -
Cca01g00411 640 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 50 639 - -
Cca01g00411 640 PANTHER XS DOMAIN-CONTAINING PROTEIN-RELATED 1 50 - -
Cca01g00411 640 PANTHER RIBONUCLEASE P SUBUNIT P38 1 50 IPR045177 GO:0080188
Cca01g00411 640 PANTHER RIBONUCLEASE P SUBUNIT P38 50 639 IPR045177 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00411 Cca-Chr1 4896550 4903859 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00411 - - gmx:102665742 1161.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00411 01 4896550 4903859 Cca05g01492 05 33871351 33881052 PCT