Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01460 ATGGACGACGAGGTGCGCCAGATCTTCAACAAGTTCGACAAGAACGGCGACGGCAAGATCTCCATCGCCGAGCTCAAGGACATGCTCGTCACGCTCGGCTCCAAAACGACGAACGACGAGCTCAAACGCATGATGGAGGAGCTCGACCAAAACGGCGACGGTTTCATCGACCTCAAGGAGTTCGCCGACTTCCATTGCAATGACGCCGGAAACGACGACTCCAAGGAGCTCCGCGACGCCTTCGATCTCTACGACGTCGACAAGAACGGCCTCATCTCCGCCAAGGAGTTGCACGACGTGCTCCGGAGGCTCGGCGAGAAGTGCTCCCTCAGCGACTGCCGCAAGATGATCAGCAACGTCGACGCCGACGGCGATGGCAACGTCAACTTCGAGGAGTTTAAGAAGATGATGGCTCGCTCTTAG 423 0.5792 MDDEVRQIFNKFDKNGDGKISIAELKDMLVTLGSKTTNDELKRMMEELDQNGDGFIDLKEFADFHCNDAGNDDSKELRDAFDLYDVDKNGLISAKELHDVLRRLGEKCSLSDCRKMISNVDADGDGNVNFEEFKKMMARS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01460 140 ProSiteProfiles EF-hand calcium-binding domain profile. 108 140 IPR002048 GO:0005509
Cca05g01460 140 Gene3D - 73 140 - -
Cca05g01460 140 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 140 - -
Cca05g01460 140 CDD EFh 76 138 IPR002048 GO:0005509
Cca05g01460 140 ProSitePatterns EF-hand calcium-binding domain. 121 133 IPR018247 -
Cca05g01460 140 ProSiteProfiles EF-hand calcium-binding domain profile. 36 71 IPR002048 GO:0005509
Cca05g01460 140 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Cca05g01460 140 SUPERFAMILY EF-hand 3 138 IPR011992 -
Cca05g01460 140 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Cca05g01460 140 CDD EFh 4 65 IPR002048 GO:0005509
Cca05g01460 140 ProSiteProfiles EF-hand calcium-binding domain profile. 72 107 IPR002048 GO:0005509
Cca05g01460 140 ProSitePatterns EF-hand calcium-binding domain. 49 61 IPR018247 -
Cca05g01460 140 SMART efh_1 4 32 IPR002048 GO:0005509
Cca05g01460 140 SMART efh_1 112 140 IPR002048 GO:0005509
Cca05g01460 140 SMART efh_1 40 68 IPR002048 GO:0005509
Cca05g01460 140 SMART efh_1 76 104 IPR002048 GO:0005509
Cca05g01460 140 Pfam EF-hand domain pair 4 64 IPR002048 GO:0005509
Cca05g01460 140 Pfam EF-hand domain pair 76 137 IPR002048 GO:0005509
Cca05g01460 140 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 140 - -
Cca05g01460 140 ProSitePatterns EF-hand calcium-binding domain. 85 97 IPR018247 -
Cca05g01460 140 Gene3D - 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01460 Cca-Chr5 33374160 33376169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01460 3 138 EF-hand Containing Proteins AT1G18210 55.882 8.41e-51 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01460 K13448 - gmx:100796491 259.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00427 01 5165604 5171733 Cca05g01460 05 33374160 33376169 PCT