Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00427 ATGGACGAGGAGGTGCGCAAGATCTTCAGCAAGTTCGACAAGAACGGCGACGGCAAGATCTCCAGCGCCGAGCTCAAGGACCTCATGGCGGCGCTGGGATCCAAGACCACGGCGGAGGAGGTGCGCCGCATGATGGCGGAGCTGGACCAGAACGGCGACGGCTACATTGACCTAAAGGAGTTCGGGGAGTTTCACTgcggcggcggcggcggcgacggGAGGGAGCTCCGGGAGGCGTTCGAGCTGTACGATCTGGACAAGAACGGGCTGATCTCGGCGAAGGAGCTGCATTCGGTGATGAGGAGGTTGGGGGAGAAGTGCTCCCTCAGTGACTGCCGGAGGATGATCGGAAACGTCGACGCCGACGGCGATGGCAGCGTCAATTTCGAAGAGTTCAAGAAGATGATGACTCGCTCCTAG 420 0.5643 MDEEVRKIFSKFDKNGDGKISSAELKDLMAALGSKTTAEEVRRMMAELDQNGDGYIDLKEFGEFHCGGGGGDGRELREAFELYDLDKNGLISAKELHSVMRRLGEKCSLSDCRRMIGNVDADGDGSVNFEEFKKMMTRS 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00427 139 Pfam EF-hand domain pair 75 137 IPR002048 GO:0005509
Cca01g00427 139 Pfam EF-hand domain pair 3 62 IPR002048 GO:0005509
Cca01g00427 139 Gene3D - 72 139 - -
Cca01g00427 139 Gene3D - 1 67 - -
Cca01g00427 139 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Cca01g00427 139 CDD EFh 4 61 IPR002048 GO:0005509
Cca01g00427 139 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 139 - -
Cca01g00427 139 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Cca01g00427 139 CDD EFh 75 137 IPR002048 GO:0005509
Cca01g00427 139 ProSitePatterns EF-hand calcium-binding domain. 120 132 IPR018247 -
Cca01g00427 139 ProSiteProfiles EF-hand calcium-binding domain profile. 107 139 IPR002048 GO:0005509
Cca01g00427 139 ProSiteProfiles EF-hand calcium-binding domain profile. 36 70 IPR002048 GO:0005509
Cca01g00427 139 ProSitePatterns EF-hand calcium-binding domain. 84 96 IPR018247 -
Cca01g00427 139 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 139 - -
Cca01g00427 139 SMART efh_1 111 139 IPR002048 GO:0005509
Cca01g00427 139 SMART efh_1 75 103 IPR002048 GO:0005509
Cca01g00427 139 SMART efh_1 40 68 IPR002048 GO:0005509
Cca01g00427 139 SMART efh_1 4 32 IPR002048 GO:0005509
Cca01g00427 139 ProSiteProfiles EF-hand calcium-binding domain profile. 71 106 IPR002048 GO:0005509
Cca01g00427 139 SUPERFAMILY EF-hand 3 138 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00427 Cca-Chr1 5165604 5171733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00427 3 136 EF-hand Containing Proteins AT1G66400 57.246 8.46e-52 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00427 K13448 - gmx:100806813 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00427 01 5165604 5171733 Cca05g01460 05 33374160 33376169 PCT