Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01432 ATGGCTGTGCATTTTCTTCTCCTGCTTTTAGCACTCTCTCTTGCTGCAGCTGATGAAGAAGCATTCATTGGAGTGAATATTGGAACCGATCTCTCAGACATGCCACACCCTACTCAAGTAGTAGCTCTACTTAAAGCACAGCAAATTCGTCATGTTCGATTGTATGATGCTGACCAAGCTATGCTCCTTGCACTTGCAAAGACAGGAATTCAAGTTGTTGTGACTGTCCCTAATGAAGAGCTTCTAGCAATTGGTCAATCGAATTCCTCAGCTGCGAATTGGGTTTTCCGCAATGTGGTAGCTCATTTTCCAGCCACCAACATCACAGCCATTTGTGTTGGTTCTGATGTTTTAACTACCCTCCCCAATGCAGCAAAAGTACTTGTCAATGCTATCAAATACATTCACTCAGCCCTTGTGGCATCCAATCTTGATCGCCAAGTTAAAGTTTCAACACCCCTTTCATCTTCCATCATCCTTGATTCATTTCCACCTTCTCAAGCTTTCTTTAACCGTTCGCTCAATCCGGTTTTAGTCCCACTACTGGAATTCTTGCAATCCACCGGTTCTTATCTGATGCTAAACATATACCCTTACTATGACTACATGCAATCAAATGGAGTGATTCCATTAGACTATGCACTCTTCAAACCTCTCCCTCCGAACAAAGAAGCCGTTGACTCCAACACCCTTCTCCACTACACCAATGTCTTTGATGCCATGGTTGATGCCGCATACTTTGCCATGGGTTTTCTAAATTACACCAACATTCCTGTAGTAGTGACCGAGTCGGGCTGGCCCTCAAAAGGTGGCTCCAATGAACCTGATGCAACGGTTGACAATGCCAATACTTACAACAGCAATTTGATCAAGCATGTTTTTAACAAAACTGGAACTCCAAAACACCCTGGAATTGGTGTTAGTACTTACATCTATGAGCTCTACAACGAGGATATGAAATCGGGGCCGCTGTCAGAGAAGAATTGGGGACTGTTTGATGCCAATGGGACACCTATTTACATTTTACACTTGACAGGATCAGGGGCAGTCCTAGCAAATGATACCAGCAATCAAACTTTCTGCATTGCAAAGGATGGTGCTGACCCGAAAATGCTTCAGGCTGCACTAGATTGGGCATGTGGACCTGGGAAAGTGGAATGCTCTCCATTGCTACAAGGGCAACCATGCTATGAACCAGACAATGTCATTGCACATGCAAATTATGCCTTTGACACTTACTATCATAAGATGGGAAAGACTCCTGATGCATGTGACTTCAATGGAGTGGCTACAATCTCCACCTCAGATCCAAGTCATGGTTCTTGTGTATTTCCTGGAAGTCTTGGCAAAAATGGTACCTTAGGTAACTTCACAGCTCCATCCATGAATTCTACCAATTCAGATTCCTCAGCCTACAACCTTCGCAGCTGTGACTTGAGAATTAGAAGCCTTCTAATGGTAACTGGGTTTCTAGTATGGGGAGTGGTTTTGCTATAA 1497 0.4382 MAVHFLLLLLALSLAAADEEAFIGVNIGTDLSDMPHPTQVVALLKAQQIRHVRLYDADQAMLLALAKTGIQVVVTVPNEELLAIGQSNSSAANWVFRNVVAHFPATNITAICVGSDVLTTLPNAAKVLVNAIKYIHSALVASNLDRQVKVSTPLSSSIILDSFPPSQAFFNRSLNPVLVPLLEFLQSTGSYLMLNIYPYYDYMQSNGVIPLDYALFKPLPPNKEAVDSNTLLHYTNVFDAMVDAAYFAMGFLNYTNIPVVVTESGWPSKGGSNEPDATVDNANTYNSNLIKHVFNKTGTPKHPGIGVSTYIYELYNEDMKSGPLSEKNWGLFDANGTPIYILHLTGSGAVLANDTSNQTFCIAKDGADPKMLQAALDWACGPGKVECSPLLQGQPCYEPDNVIAHANYAFDTYYHKMGKTPDACDFNGVATISTSDPSHGSCVFPGSLGKNGTLGNFTAPSMNSTNSDSSAYNLRSCDLRIRSLLMVTGFLVWGVVLL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01432 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 6 483 IPR044965 GO:0004553|GO:0005975
Cca05g01432 498 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
Cca05g01432 498 Pfam X8 domain 360 431 IPR012946 -
Cca05g01432 498 Gene3D Glycosidases 22 348 - -
Cca05g01432 498 SMART X8_cls 359 444 IPR012946 -
Cca05g01432 498 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Cca05g01432 498 Gene3D - 353 445 - -
Cca05g01432 498 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 6 483 - -
Cca05g01432 498 ProSitePatterns Glycosyl hydrolases family 17 signature. 257 270 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01432 Cca-Chr5 32952948 32955866 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01432 17 467 Glycoside Hydrolase AT1G66250 75.938 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01432 K19891 - gmx:100799965 946.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00436 01 5332086 5341000 Cca05g01432 05 32952948 32955866 PCT