Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00436 ATGTTTGTTAGGGAGATTTACACTATGGTAATGCGCTTTCTTCTGCTTCTTTTTGCAGTGTATGTTGCTGCTGCTGATGAAGAACCATTTATAGGGGTGAATATTGGAAGAGACCTCTCAGACATGCCTCACCCCACTCAAGTAGTAGCACTACTTAAAGCTCAACAAATTCGACATGTTCGGTTGTATGATGCTGATGAAGCTATGCTCATTGCCCTTGCAAAGACAGGAATCCAAGTTGCTGTGTCTGTACCTAATGAAGAGATCCTAGCAATTGGTCAATCAAATACCACAGCCGCAAAATGGGTTTCCCGAAATATTGTGGCACATTACCCTGCCACTAACATAACAACCATTTGTGTTGGTTCTGATGTTTTAACTACCCTCCCCAATGCAGCAAAAGTCCTTGTGAGTGCCCTTAAATTCATTCACTCAGCCCTTGTGGCATCCAATCTCGATCGCCAAATCAAAGTTTCAACACCCTTTTCCTCTTCCATGATCCTCGACTCATTTCCACCTTCACAAGCCTTCTTTAATCGATCACTGAATACAATCTTGGTTCCAATGCTTGATTTCTTGCAATCCACTGGCTCTCATCTCATGCTCAACATCTACCCTTACTACGACTACATGCAGTCAAATGGTGTGATCCCTTTGGAGTATGCACTCTTCAAACCCCTCCCTCCAAACAAAGAAGCCATTGACTCCAACACCCTTCTCCACTACTCCAACGTGTTTGATGCTGTGGTTGATGCAGCATACTTTGCCATGTCTTTTCTGAACTACACCAACATCCCTGTGGTGGTGACAGAAACAGGTTGGCCCTCAAAAGGTGACTCTAATGAGCCTGATGCAACAGTGGAAAATGCCAACACTTACAACAGCAATTTGATCAAGCATGTGCTGAACGTAACTGGAACTCCAAAGCACCCTGGAATTGGTGTTAGCACTTACATCTATGAGCTCTACAATGAGGACACAAAGGCAGGGCCATTGTCAGAGAAGAATTGGGGTTTGTTTGATGCAAATGGTGTACCTGTTTATGTTTTGCAGTTGACAGGATCAGGAGGAGTGTTGGCAAATGACACCACCAATCAAACTTATTGCATTGCAAAGGATGGTGCTGATCCTAAGATGCTGCAGGCTGGAATAGATTGGGCTTGTGGACCTGGCAAGGTGGATTGCTCTCCTTTGCTGCAGGGAGAACCATGTTATGAACCTGACAATGTGGTTGCACATGCAAATTATGCTTTTGACACTTACTATCATCAGATGGGAAAGTCTCCTCAGTCTTGTGATTTCAATGACATGGCTACAATCTCCACCACAGATCCAAGTCATGGGTCATGTGTATTTCCTGGAAGGCTTGACAAAAATAGCACCTTCCCCAACGTTACATTATCATCAATGAATTCAACAAATTCAGATTCATCTGCCTGCAATATCCATCGAGGAGAATTGGGAATTAGAAGCCTTCTAATGGTGATGGTACTTCTAATGTGGGGAGTAGCTTTGCTATAA 1521 0.4366 MFVREIYTMVMRFLLLLFAVYVAAADEEPFIGVNIGRDLSDMPHPTQVVALLKAQQIRHVRLYDADEAMLIALAKTGIQVAVSVPNEEILAIGQSNTTAAKWVSRNIVAHYPATNITTICVGSDVLTTLPNAAKVLVSALKFIHSALVASNLDRQIKVSTPFSSSMILDSFPPSQAFFNRSLNTILVPMLDFLQSTGSHLMLNIYPYYDYMQSNGVIPLEYALFKPLPPNKEAIDSNTLLHYSNVFDAVVDAAYFAMSFLNYTNIPVVVTETGWPSKGDSNEPDATVENANTYNSNLIKHVLNVTGTPKHPGIGVSTYIYELYNEDTKAGPLSEKNWGLFDANGVPVYVLQLTGSGGVLANDTTNQTYCIAKDGADPKMLQAGIDWACGPGKVDCSPLLQGEPCYEPDNVVAHANYAFDTYYHQMGKSPQSCDFNDMATISTTDPSHGSCVFPGRLDKNSTFPNVTLSSMNSTNSDSSACNIHRGELGIRSLLMVMVLLMWGVALL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00436 506 ProSitePatterns Glycosyl hydrolases family 17 signature. 265 278 IPR000490 GO:0004553|GO:0005975
Cca01g00436 506 Gene3D Glycosidases 30 356 - -
Cca01g00436 506 Pfam X8 domain 368 439 IPR012946 -
Cca01g00436 506 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 2 14 487 - -
Cca01g00436 506 SMART X8_cls 367 452 IPR012946 -
Cca01g00436 506 Pfam Glycosyl hydrolases family 17 31 351 IPR000490 GO:0004553|GO:0005975
Cca01g00436 506 SUPERFAMILY (Trans)glycosidases 31 350 IPR017853 -
Cca01g00436 506 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 14 487 IPR044965 GO:0004553|GO:0005975
Cca01g00436 506 Gene3D - 361 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00436 Cca-Chr1 5332086 5341000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00436 25 498 Glycoside Hydrolase AT1G66250 71.849 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00436 K19891 - gmx:100811077 894.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00436 01 5332086 5341000 Cca05g01432 05 32952948 32955866 PCT