Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01429 ATGGCTCTGTTTTCCTCTGTTTCACTCTGCATGCTTATTCTCTTGTCATTCTTCTCCTTCGTTTCCTGCAATGActcactctcagtctccttccctctcacctcactccccctctcCACCCCAACGAAGCCAAAGCTCAGAAGCCTCTCCTCCTACAACGTAAAATCCTCCCTCAAATACTCCATGGCCCTCGTGGTCACCCTCCCCATAGGAACCCCACCGCAGCAGCAACAGATGGTGCTTGACACAGGAAGCCAACTCTCCTGGATCCAGTGCCACAACAAAACCCCCCCAACGACGTCGTTCCACCCCGCCCTCTCCTCCTCCTTCTACGTCCTCCCCTGCACCCACCCCCTCTGCAAGCCACGCGTCCCAGACTTCAGCCTCCCCACCACGTGCGACCGGAACCGCCTCTGCCACTACGAGTACTTCTACGCCGACGGCACCTACGCCGAGGGCAACCTCGTCAGAGAAAAACTCACCTTCTCCCCTTCCCAAACCACCCCTCCCCTCATCCTGGGCTGCGCCACCGCCTCCTCCGACGCCACCGGCATCCTCGGCATGAACCTCGGCCGCTTCTCCTTCCCCTCCCAAGCCAAAATCACCAAATTCTCATACTGCGTCCCAAACCGACAAACCCCCACCGCCACCGGCTCCTTCTACCTCGGGAACAACCCCAACTCCCCACGCTTCCGCTACGTCAGCATGTTGACCTTCCCCCAAAGTCAACGCATGCCCAACTTGGACCCCTTCGCCTACACCCTCCCCATGCACGCCATAACAATAAACGGAAACCGCCTCAACATCCAACCCTCCGTTTTCCGCCCCAACGCCGGCGGCTCCGGTCAGACCATGATCGACTCCGGCTCCGAATTCACCTTCCTCGTGGACGCCGCCTACGACGTCGTGCGGGCACAGATAATGAAAGCGGTGGGGCCCAGGGTTAAGAAGGGCTACGTGTACGGCGGTGCCGCTGACATGTGTTTTGATGGCAATGCAATCGAGATCGGACGGTTGATAGGCGACGTGGTGTTCGAGTTCGACCAGGGCGTGGAGATCGTGGTTCCTAAGGAGAGGGTGCTCGCTGACGTGGGCGGTGGGGTCCACTGCGTCGGAATCGGGAGGTCCGAGAGATTGGGTGCGGCCAGTAACATCATTGGCAACTTCCACCAGCAGAATCTGTGGGTGGAGTTCGATCTCGCCAATCGGAGAGTGGGATTCGGTGCGGCCGGTTGTAGCGGATAG 1245 0.5727 MALFSSVSLCMLILLSFFSFVSCNDSLSVSFPLTSLPLSTPTKPKLRSLSSYNVKSSLKYSMALVVTLPIGTPPQQQQMVLDTGSQLSWIQCHNKTPPTTSFHPALSSSFYVLPCTHPLCKPRVPDFSLPTTCDRNRLCHYEYFYADGTYAEGNLVREKLTFSPSQTTPPLILGCATASSDATGILGMNLGRFSFPSQAKITKFSYCVPNRQTPTATGSFYLGNNPNSPRFRYVSMLTFPQSQRMPNLDPFAYTLPMHAITINGNRLNIQPSVFRPNAGGSGQTMIDSGSEFTFLVDAAYDVVRAQIMKAVGPRVKKGYVYGGAADMCFDGNAIEIGRLIGDVVFEFDQGVEIVVPKERVLADVGGGVHCVGIGRSERLGAASNIIGNFHQQNLWVEFDLANRRVGFGAAGCSG 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01429 414 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 79 90 IPR001969 GO:0004190|GO:0006508
Cca05g01429 414 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 38 413 - -
Cca05g01429 414 Gene3D Acid Proteases 40 222 IPR021109 -
Cca05g01429 414 PANTHER ASPARTYL PROTEASE-RELATED 38 413 IPR001461 GO:0004190|GO:0006508
Cca05g01429 414 Gene3D Acid Proteases 223 414 IPR021109 -
Cca05g01429 414 ProSiteProfiles Peptidase family A1 domain profile. 64 408 IPR033121 -
Cca05g01429 414 SUPERFAMILY Acid proteases 65 412 IPR021109 -
Cca05g01429 414 Pfam Xylanase inhibitor N-terminal 65 224 IPR032861 -
Cca05g01429 414 Pfam Xylanase inhibitor C-terminal 252 408 IPR032799 -
Cca05g01429 414 CDD pepsin_A_like_plant 65 412 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01429 Cca-Chr5 32806153 32807940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01429 66 413 Miscellaneous Gene Families AT1G44130 21.875 2.85e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01429 - - ccaj:109788287 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00444 01 5499740 5500828 Cca05g01429 05 32806153 32807940 PCT