Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00444 ATGGCGCTGATCGTGGAGCTTCCCATAGGGACCCCACCGCAGGTTCAGCCAATGTTGCTGGACACGGGAAGCCACCTCTCGTGGATTCAGTGTCACAAGAAAGCGCCCAAGAGGcctcccccgaccgcctcctttgacccttctctctcctccaccttctccatcctcccctgcacgcaccccctcTGCAAGCCGCGAATTCCCGACTTTACCCTCCCAACTTCCTGCGACCAGAACCGCCTCTGCCACTATTCCTATTTCTACGCCGACCGTACTTACGCCGAGGGTAATCTCGTCAAGGAAAAGTTCACTTTCTCCCCTTCCCTTTTTACCCCTCGTTTGATCCTGGGTTGCGCTACCCAATCCACCGACCCAAGGGGCATTTTGGGAATGAACCGCGGACGCCTCTCCTTCGCCTCGCAATCCAAAATCACCAAATTCTCTTACTGTGTCCCCCCACGCGGATCCACCCCAACCGGCTCCTTCTACCTCGGCAACAACCCCAATTCCCACACCTTCCGCTACGTCCAAATGTTGACTTTTTCCAACACTCAACGCATGCCCAATCTCGACCCCTTGGCCTACACGGTCCCCTTGCAGGGGATAAGAATCGGGGCCAAAAAACTAAGCATCTCGCCTCGGGTTTTTCGCCCCGACGCTGGCGGCTCCGGTCAAACCATCGTTGACTCCGGATCCGAGTTTACGTATTTGGTTAGTGAGGCTTACGATAAGGTGCGGGCGGAGGTGGTTAGGGCTGTGGGGCCCAGGATGAAGAGGGATTACGTGTACGGCGACGTCGCTGACATGTGTTTCGATGGGAACGCGGTTGAGATCGGACGGCTGATAGGGGAGATGGTGTTTGAGTTCGAGAATGGGGTGGAGATTGTGGTTCCCAAGGAGAGGGTACTCGCGCGCGTCAATCATAATGATGGGGTTCACTGCGTGGGGATTGCCAACTCTGACAAATTGGGTGCGCCCAGCAACATTATTGGGAACTTCCATCAGCAGAATCTCTGGGTGGAGTTTGATCTCGCCAACCGCAGACTGGGCTTCGCTGCGGCTGATTGTAGCAGAAGATTGCCCTACTAG 1089 0.5179 MALIVELPIGTPPQVQPMLLDTGSHLSWIQCHKKAPKRPPPTASFDPSLSSTFSILPCTHPLCKPRIPDFTLPTSCDQNRLCHYSYFYADRTYAEGNLVKEKFTFSPSLFTPRLILGCATQSTDPRGILGMNRGRLSFASQSKITKFSYCVPPRGSTPTGSFYLGNNPNSHTFRYVQMLTFSNTQRMPNLDPLAYTVPLQGIRIGAKKLSISPRVFRPDAGGSGQTIVDSGSEFTYLVSEAYDKVRAEVVRAVGPRMKRDYVYGDVADMCFDGNAVEIGRLIGEMVFEFENGVEIVVPKERVLARVNHNDGVHCVGIANSDKLGAPSNIIGNFHQQNLWVEFDLANRRLGFAAADCSRRLPY 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00444 362 Gene3D Acid Proteases 165 360 IPR021109 -
Cca01g00444 362 CDD pepsin_A_like_plant 4 356 IPR034161 -
Cca01g00444 362 Pfam Xylanase inhibitor N-terminal 5 166 IPR032861 -
Cca01g00444 362 SUPERFAMILY Acid proteases 5 358 IPR021109 -
Cca01g00444 362 Pfam Xylanase inhibitor C-terminal 194 352 IPR032799 -
Cca01g00444 362 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 3 358 - -
Cca01g00444 362 PANTHER ASPARTYL PROTEASE-RELATED 3 358 IPR001461 GO:0004190|GO:0006508
Cca01g00444 362 Gene3D Acid Proteases 3 164 IPR021109 -
Cca01g00444 362 ProSiteProfiles Peptidase family A1 domain profile. 3 352 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00444 Cca-Chr1 5499740 5500828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00444 5 358 Miscellaneous Gene Families AT1G44130 24.235 1.64e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00444 - - gmx:100806624 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00444 01 5499740 5500828 Cca05g01429 05 32806153 32807940 PCT