Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01384 ATGTCAGACCCTCCAAAGGTTCACCCCGTCCATGATGTTGAGGCACCAAACGAAAACCAAAACCACCCTTCAGCACCATTGGTGCCAAGGACCATGTCCAAATCTGATGCAGGTGATCCAGAGAAAGTGGATCAACATCAACAACACCCTCCACAAGGAACCATTCCTGTGATGCATTCAAAGCCACCAAAGAAAAGAAGAAGCTGCTGCTGCAGATTTTTCTGTTGGACAATTAGCATATTGCTGATTCTTATTGTGGCCATTGGCATCACCGTAGGGATACTATTCCTTGTGTTCAGACCAAAGCTTCCAAAGTACTCAGTGGATGAACTTGGAGTCTCACAGTTTGATCCTTCTGACAACAACAGTTTGTCTGTGACATTCAACTTGACAATCACGGCCAGAAATCCTAACAAGAAGATTGGAATAGACTATAGAGGTGGCAGCCACATAAGTGCTTGGTATTTGGACACAAAACTTTGTGAAGGGTCTTTGCCAAAATTTTACCAAGGACACCGCAACACCACGGTGCTTAGTATCCCTCTCAGAGGGCACACACAGAATGCTACTGGTTTGCAAAGTATGGTTCAGGAGCAACTGCAAGAAACGGGTAATGTGCCACTCAATTTGAAGGTTAAGCAGCCTGTGAGGATCAAGCTTGGGAAGTTGAAGCTCTTCAAAATCAAGTTCAGGGTTAGGTGCAAGATTGTGGTGGACAACCTTAGTGCTAATAATTCTATTAGAATTAGGAGCAGTAGTTGTAAATTCAGGTTTCGGCTGTGA 783 0.4432 MSDPPKVHPVHDVEAPNENQNHPSAPLVPRTMSKSDAGDPEKVDQHQQHPPQGTIPVMHSKPPKKRRSCCCRFFCWTISILLILIVAIGITVGILFLVFRPKLPKYSVDELGVSQFDPSDNNSLSVTFNLTITARNPNKKIGIDYRGGSHISAWYLDTKLCEGSLPKFYQGHRNTTVLSIPLRGHTQNATGLQSMVQEQLQETGNVPLNLKVKQPVRIKLGKLKLFKIKFRVRCKIVVDNLSANNSIRIRSSSCKFRFRL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01384 260 Pfam Late embryogenesis abundant protein 131 235 IPR004864 -
Cca05g01384 260 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 22 258 - -
Cca05g01384 260 PANTHER EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN, PUTATIVE-RELATED 22 258 - -
Cca05g01384 260 MobiDBLite consensus disorder prediction 1 63 - -
Cca05g01384 260 MobiDBLite consensus disorder prediction 1 15 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01384 Cca-Chr5 32116733 32117877 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01384 10 248 EF-hand Containing Proteins AT5G21130 28.800 6.86e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01384 - - gmx:100782663 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01384 05 32116733 32117877 Cca05g01384 05 32116733 32117877 ECH
Cca01g00514 01 6379248 6380500 Cca05g01384 05 32116733 32117877 PCT