Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g00514 ATGTCAGATCATCAAAGAATTCATCCGGTTCATGATGTGGAGGCACCACACAGACCATTGGTGCCTGAAAACACTGCAAAATCTGACAAGGGTACTACTGATCTTCCTCGGCGAACATTTCCTGTGATGCATTCAAAGCCACCAAAGAAAAGAAGAAGCTGTTGCTGCAGGTTCCTGTGTTGGACACTCACCACGTTGTTGATTCTGATAGTTGCTATAGCCATCACTGTAGGGATCCTATACCTTGTGTTCAGGCCTAAGCTTCCAAAATACTCGGTGGACCATCTCAGAATAAGCCAGTTCAATGAGTCTGACAGCAACAACAGCCTCTATGCCAGCTTCAATGTGAGAATCACTGCAAGGAACCCTAACAAGAAGATTGGGATATACTATGAGGGTGGAAGCCACATAAGTGCTTGGTACATGGACACACAACTGTGTGAAGGGTCCTTGCCAAAGTTCTACCAGGGTCACAGGAACACCACAGTGCTTGATTTGAGTCTCAGTGGCCAAGCACAGGATGCTAGTGGCTTGTTGAGTAGGATTCAGCAGCAGGTGCAAGAGACCAACAATGTTCCACTCAATCTTAGGGTTAATCAGCCTGTGAGGGTTAAGCTTGGGAAGTTGAAGTTGTTCAAGGTTAAGTTCAGGGTTAGGTGCAGACTTGTGGTGGATAATCTTGGTGCTAGTGAAGATATTAGAATTTCCAGCAGTAGCTGTAAGTTTAGGCTTAGGCTATGA 741 0.4561 MSDHQRIHPVHDVEAPHRPLVPENTAKSDKGTTDLPRRTFPVMHSKPPKKRRSCCCRFLCWTLTTLLILIVAIAITVGILYLVFRPKLPKYSVDHLRISQFNESDSNNSLYASFNVRITARNPNKKIGIYYEGGSHISAWYMDTQLCEGSLPKFYQGHRNTTVLDLSLSGQAQDASGLLSRIQQQVQETNNVPLNLRVNQPVRVKLGKLKLFKVKFRVRCRLVVDNLGASEDIRISSSSCKFRLRL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g00514 246 MobiDBLite consensus disorder prediction 1 48 - -
Cca01g00514 246 PANTHER EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN, PUTATIVE-RELATED 38 244 - -
Cca01g00514 246 PANTHER LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY 38 244 - -
Cca01g00514 246 Pfam Late embryogenesis abundant protein 117 221 IPR004864 -
Cca01g00514 246 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g00514 Cca-Chr1 6379248 6380500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g00514 49 246 EF-hand Containing Proteins AT5G21130 30.303 5.46e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g00514 - - gmx:100789322 410.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g00514 01 6379248 6380500 Cca05g01384 05 32116733 32117877 PCT