Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01082 ATGGCTTCCTTTATTGCATTGGTTTTGGGTGTATGTCTAGGAATGAACATGGCCATGCCGACACTGGCAGCTGTCCACACTGTCGGAGACAGCTCAGGTTGGACACTTGGTGCTGATTACAGCACATGGGCTAGTAGCGTCAACTTTAAAGTCGGTGATAGTCTTGTTTTCAATTATGGGGCTGGTCACACGGTGGACGAAGTTAAAGAGAGCGATTACAAGAGCTGCAGCACGGGCAATTCACTGAGTACAGACAGCAGCGGTGCCACCACCATCGCCCTCAAGACTGCCGGCACTCATTACTTCATATGTGCAGTTCCTGGCCATTGCAAGGGTGGCATGAAGCTTGCTGTTAAGGTCAAGCCTAAAAAATCACCTCCAccttcaccttctccttctccttctccttctccttctccttctcctCAAGATGTCACTGACACCAAACACACACACAcaccctctcctacaacttcaacctcctcctccaccgccaccACATCTTCACAGTCATCACATGCCTCCTCCTCATCTCGTTTTCCAGTTGTTGCTATGTTTCTTGCTTCTTCCATCTCCTCCTACTTTCTGTTACGTTTCATGTGA 603 0.4129 MASFIALVLGVCLGMNMAMPTLAAVHTVGDSSGWTLGADYSTWASSVNFKVGDSLVFNYGAGHTVDEVKESDYKSCSTGNSLSTDSSGATTIALKTAGTHYFICAVPGHCKGGMKLAVKVKPKKSPPPSPSPSPSPSPSPSPQDVTDTKHTHTPSPTTSTSSSTATTSSQSSHASSSSRFPVVAMFLASSISSYFLLRFM 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01082 200 PANTHER BLUE COPPER PROTEIN-LIKE 11 175 - -
Cca05g01082 200 ProSitePatterns Type-1 copper (blue) proteins signature. 98 114 IPR028871 -
Cca05g01082 200 MobiDBLite consensus disorder prediction 123 141 - -
Cca05g01082 200 PANTHER BLUE COPPER PROTEIN 11 175 IPR039391 GO:0009055
Cca05g01082 200 CDD Phytocyanin 24 120 - -
Cca05g01082 200 ProSiteProfiles Phytocyanin domain profile. 24 122 IPR003245 GO:0009055
Cca05g01082 200 MobiDBLite consensus disorder prediction 142 178 - -
Cca05g01082 200 MobiDBLite consensus disorder prediction 119 178 - -
Cca05g01082 200 Gene3D - 22 126 IPR008972 -
Cca05g01082 200 Pfam Plastocyanin-like domain 34 114 IPR003245 GO:0009055
Cca05g01082 200 SUPERFAMILY Cupredoxins 23 120 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01082 Cca-Chr5 27783348 27798358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01082 34 125 Miscellaneous Gene Families AT1G22480 63.043 3.58e-34 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01082 - - gmx:100306407 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01082 05 27783348 27798358 Cca05g01082 05 27783348 27798358 ECH
Cca05g01082 05 27783348 27798358 Cca03g01264 03 30032687 30034070 PCT