Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01264 ATGGCATTCTCTAGTGCTTTGGTTTTGGGCTCACTGATAGCAATCAACATGGCCCTGCCAACCCTTGCAACCGTCTACACCGTGGGAGATACTTCAGGTTGGGCAATTGGTGCTGATTATAGCACATGGACTGGTGACAAAACCTTTGCAGTGGGTGATAGTCTCGTGTTCAATTATGGAGCTGGGCACACAGTGGATGAAGTTAAGGAGAGTGACTACAAATCATGCACAACAGGGAACTCAATTAGTACAGACAGCAGTGGTGCCACCACCATTGCCCTTAAGACTGCAGGAACACATTACTTCATATGTTCTGTTCCTGGACACTGCTCTGGTGGCATGAAACTTGCTGTCACTGTGAAAGCAGGAAAAGCCACTGCTCCTTCAACCGGGAAGGCTTCACCTTCTGATAGcaccgccacacccaccaccactacttccaccacTGCGGCTAAATCAAATTCTTCTTCAGCTTCTAGTCTCTCACCCATTGTTGCCATGTTGATTGTTTCGTGGATCTCTTACTGTGTTTTGCGTCTGGTTTAA 546 0.4396 MAFSSALVLGSLIAINMALPTLATVYTVGDTSGWAIGADYSTWTGDKTFAVGDSLVFNYGAGHTVDEVKESDYKSCTTGNSISTDSSGATTIALKTAGTHYFICSVPGHCSGGMKLAVTVKAGKATAPSTGKASPSDSTATPTTTTSTTAAKSNSSSASSLSPIVAMLIVSWISYCVLRLV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01264 181 ProSitePatterns Type-1 copper (blue) proteins signature. 98 114 IPR028871 -
Cca03g01264 181 ProSiteProfiles Phytocyanin domain profile. 24 122 IPR003245 GO:0009055
Cca03g01264 181 MobiDBLite consensus disorder prediction 126 157 - -
Cca03g01264 181 PANTHER BLUE COPPER PROTEIN 3 178 IPR039391 GO:0009055
Cca03g01264 181 CDD Phytocyanin 24 120 - -
Cca03g01264 181 SUPERFAMILY Cupredoxins 23 120 IPR008972 -
Cca03g01264 181 Gene3D - 22 127 IPR008972 -
Cca03g01264 181 MobiDBLite consensus disorder prediction 129 157 - -
Cca03g01264 181 Pfam Plastocyanin-like domain 34 114 IPR003245 GO:0009055
Cca03g01264 181 PANTHER BLUE COPPER PROTEIN-LIKE 3 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01264 Cca-Chr3 30032687 30034070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01264 8 120 Miscellaneous Gene Families AT1G22480 60.177 1.92e-38 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01264 - - gmx:100306522 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01264 03 30032687 30034070 Cca03g01264 03 30032687 30034070 ECH
Cca05g01082 05 27783348 27798358 Cca03g01264 03 30032687 30034070 PCT