Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01079 ATGCAGAGACGCAAGTGGATTCCGTTGGCGCTGCTCAGAAAGTTCCTCATTGCAGCCATATGCTTCATAGCGTTTATCGCTCTCTTCTCTGCGCGCGTACACATTGTCCCTTCCTCTAAGGATCACAGGTTCAACGACAAGATCTCCACGCCTCAGGATCTGCAAAGCTGGACGCGAGAGCTCGCTCCACCTCATTTATCCAAGGCTCCACTTCCTACTCCCAAGTTAAATGGTTCAAGAGGGTCTTTAGATTATCAGAAGCTGTGGAAGCCTCCATCAAATCGTGGGTTTCTGCCCTGTACAAATCCTACACCTAATTACACCACTCCTGCCAAGTCGCGAGGATATCTTTTAGTTCATACAAATGGTGGACTCAACCAAATGCGTTCTGGGATATGTGATATGGTAGCAGTAGCTCGTATCATAAATGCCACTCTTGTTATTCCAGAACTTGATAAAAGATCATTCTGGCAAGATACTAGCAATTTCTCTGATATTTTTGATGAAGAGCATTTTATGTATTCTCTAGCTAATGATGTAAAAATCATTAAGAAGCTTCCCCAAGATCTGGTTAACGTAACCAGAGTGGTCAAGCAATTCATAAGCTGGTCTGGCATGGATTACTATGAGAATGAGATTGCTAGCTTGTGGGAAAATTACCAAGTTATTCGAGCTTCTAAATCTGATTCACGATTAGCAAACAACAATCTACCTCCAGACATTCAGAAGCTTCGCTGCCGAGCTTGTTATGAAGCTCTTCGCTTCTCTCCTCACATTGAACAAATGGGAAAATTGTTGGTGGAGAGGATGAGGTCATTTGGTCCTTATATTGCATTGCATTTGCGTTACGAGAAGGATATGCTTGCATTTAGTGGGTGCACACATGATTTATCTCCTGTTGAAGCTGAAGAGCTACGGATGATCAGAGAGAACATTTCATATTGGAAAATAAAAGACATTGATCCAATAGAACAGAGGTCCAAAGGGCTTTGCCCCTTAACTCCAAAGGAAGTTGGGATTTTTCTCACTGCCCTTGGATACCCATCAACAACTCCAATATACATTGCTGCTGGAGAGATATATGGGGGTGAGTCTCATATGGTTGAACTGCGTTCCCGCTATCCATTGTTAATGAGCAAGGAAAAATTGGCATCCATAGAAGAGCTTGAACCCTTTTCTAACCATGCATCCCAAATGGCTGCTCTTGACTATATTGTATCTATTGAAAGTGATGTATTTATACCTTCTTATTCTGGAAACATGGCAAAGGCTGTTGAGGGTCATCGACGTTTTCTTGGACGTGGAAGAACAATATCTCCAGACAAGAAAGCCCTTGTTCGTCTGTTCGATAAACTAGATCAGGGAATAATGACTGAGGGGAAGAAACTATCAAATAGGATTATTGATCTCCACAGAAGACGACTTGGCTCTCCCAGGAAGAGAAAGGGGCCAATTTCTGGAACAAAGGGCATGGAAAGGTTTCGCTCAGAAGAGACCTTTTATGCTAATCCCTTGCCTGATTGTTTATGCCAGACAGAACCACCACCTCTAAACATTTCTCGTACTGTTTGA 1572 0.4275 MQRRKWIPLALLRKFLIAAICFIAFIALFSARVHIVPSSKDHRFNDKISTPQDLQSWTRELAPPHLSKAPLPTPKLNGSRGSLDYQKLWKPPSNRGFLPCTNPTPNYTTPAKSRGYLLVHTNGGLNQMRSGICDMVAVARIINATLVIPELDKRSFWQDTSNFSDIFDEEHFMYSLANDVKIIKKLPQDLVNVTRVVKQFISWSGMDYYENEIASLWENYQVIRASKSDSRLANNNLPPDIQKLRCRACYEALRFSPHIEQMGKLLVERMRSFGPYIALHLRYEKDMLAFSGCTHDLSPVEAEELRMIRENISYWKIKDIDPIEQRSKGLCPLTPKEVGIFLTALGYPSTTPIYIAAGEIYGGESHMVELRSRYPLLMSKEKLASIEELEPFSNHASQMAALDYIVSIESDVFIPSYSGNMAKAVEGHRRFLGRGRTISPDKKALVRLFDKLDQGIMTEGKKLSNRIIDLHRRRLGSPRKRKGPISGTKGMERFRSEETFYANPLPDCLCQTEPPPLNISRTV 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01079 523 CDD O-FucT_plant 116 437 IPR024709 -
Cca05g01079 523 Pfam GDP-fucose protein O-fucosyltransferase 116 431 IPR019378 -
Cca05g01079 523 PANTHER OS02G0726500 PROTEIN-RELATED 4 521 - -
Cca05g01079 523 PANTHER AUXIN-INDEPENDENT GROWTH PROMOTER-LIKE PROTEIN 4 521 - -
Cca05g01079 523 PIRSF UCP009360 1 514 IPR024709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01079 Cca-Chr5 27728004 27732458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01079 60 514 Miscellaneous Gene Families AT1G22460 70.330 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01079 - - gmx:100795727 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01079 05 27728004 27732458 Cca05g01079 05 27728004 27732458 ECH
Cca05g01079 05 27728004 27732458 Cca03g01257 03 29925763 29930799 PCT