Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01257 ATGAAGACTCTCACAGTCCGAGAGAGAAGAGGATTAATGCAGAGGCGTAGGACGGTTTCACTCGGCATGCTCAGGAGGTTCCTCGCCGCAACAATTTTCTCAGTAGTTGTCACTTCTTTCTTCTTTGTTCATGTTCACGTTTCTCCGTCCCCCACTGATCACAAGTTCAATGAAAAGATCCCCTCGTTTCATGACCCGCAAAGCTGGACTCGAGAACTCGCTCCGCCTCATCTATCCATGGCTCCGCTCTCTGTTTCCAAGATGAAGGATTCAAGAAAGGATTCAGACTACGAGAAACTGTGGAAGCCTCCACCAAATCATGGGTTTATACCCTGTGCAAAGCCTACTCCTAATTACACAACTCCTGCAAGATCACGTGGTTACCTTTCAGTTCATACGAATGGAGGGCTAAACCAAATGCGTACTGGGATATGTGATATGGTAGCTATAGCACGTATCATAAATGCCACTCTTGTAATTCCAGAACTTGATAAAAAGTCATTTTGGCATGATACTAGCAATTTCTCTGATATCTTTGATGAAGACTGGTTTATTAGTTCTCTAGCTAATGATGTAAGAATCATTAAGAAGCTTCCCAAAAAACTGGTTAATGCAACCAGAATTGTCATGCAATTCAAAAGCTGGTCTGGCATGGATTACTATGAGAATGAGATTGCTTCCTTGTGGGATAATTTCAAAGTAATTCGAGCTAGCAAAACTGATTCTCGGTTAGCAAATAACAATCTACCTCCAGATATTCAGAAGCTTCGCTGCCGTGCTTGTTATGAAGCTCTTCATTTCTCTCCTCACATCGAAAAAATGGGAAAAATATTAGTGGAAAGGATGAGGTCATTCGGCCCTTATATTGCATTACATTTACGTTATGAGAAGGATATGCTTTCATTTAGTGGGTGCACACATGAATTATCTACAGTTGAGGCTGAGGAGCTGCGAATTATCAGAGAGAACACTAGTTATTGGAAAAGAAAGTACATTAACTCCACAGAAGAGAGGTCTAAAGGGTTTTGCCCCTTAACTCCAAAGGAAGTTGGAATTTTTCTGACTGCTCTGGGATACCCATCAAAGACTCCAATATATATTGCTGCTGGGGAGATATATGGGGGTGAGTCCCATATGACTGACCTGCTATCACGCTATCCATTGTTAATGAGCAAGGAAAAGTTGGCATCCATTGAGGAGCTTGAACCATTTTCTAGGCATGCGTCTCAAATGGCTGCTCTTGACTATATTGTATCCGTTGAAAGTGATGTATTTGTACATTCTTACCCTGGAAACATGGCGAAAGCTGTTGAAGGCCATCGTCGTTTTCTTGGGAGCGGAAGAACAATATCTCCTGATAGGTGA 1365 0.4212 MKTLTVRERRGLMQRRRTVSLGMLRRFLAATIFSVVVTSFFFVHVHVSPSPTDHKFNEKIPSFHDPQSWTRELAPPHLSMAPLSVSKMKDSRKDSDYEKLWKPPPNHGFIPCAKPTPNYTTPARSRGYLSVHTNGGLNQMRTGICDMVAIARIINATLVIPELDKKSFWHDTSNFSDIFDEDWFISSLANDVRIIKKLPKKLVNATRIVMQFKSWSGMDYYENEIASLWDNFKVIRASKTDSRLANNNLPPDIQKLRCRACYEALHFSPHIEKMGKILVERMRSFGPYIALHLRYEKDMLSFSGCTHELSTVEAEELRIIRENTSYWKRKYINSTEERSKGFCPLTPKEVGIFLTALGYPSKTPIYIAAGEIYGGESHMTDLLSRYPLLMSKEKLASIEELEPFSRHASQMAALDYIVSVESDVFVHSYPGNMAKAVEGHRRFLGSGRTISPDR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01257 454 PIRSF UCP009360 2 454 IPR024709 -
Cca03g01257 454 PANTHER AUXIN-INDEPENDENT GROWTH PROMOTER-LIKE PROTEIN 11 454 - -
Cca03g01257 454 PANTHER OS02G0726500 PROTEIN-RELATED 11 454 - -
Cca03g01257 454 CDD O-FucT_plant 128 449 IPR024709 -
Cca03g01257 454 Pfam GDP-fucose protein O-fucosyltransferase 128 443 IPR019378 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01257 Cca-Chr3 29925763 29930799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01257 72 454 Miscellaneous Gene Families AT1G22460 69.713 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01257 - - gmx:100807411 832.017
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01257 03 29925763 29930799 Cca03g01257 03 29925763 29930799 ECH
Cca05g01079 05 27728004 27732458 Cca03g01257 03 29925763 29930799 PCT