Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01072 ATGGCCATCTCCTCCACTTCCAACTCCCTCATTCCCACCAAATCCCTCATCCACCAAACCCACCCCCTCATTCCCTCCACCAACCTCAGGCCCGCTCTCAGGCCCAACCACTCCCCCTCCCCCATCTCAGCCGTCCACGCCGCTGACCCTGCCAAAAACCCCCTCCTCACCGACAAgcccaagtcccagccccctccccctccccccgcggcccgcacccTCAAATGGGCCGTCGACAGCTGGAAGTCCAAGAAGGCCCTGCAGCTCCCCGACTACCCCAACCAGGACGACCTTCACTCCGTCCTCCGAACCCTTGACGCCTTCCCTCCCATCGTCTTCGCCGGCGAAGCCAGAACCCTCGAGGAGCGTCTCGGCGAGGCCGCCCTCGGAAATGCCTTCCTCCTCCAAGGCGGAGACTGCGCCGAAAGCTTCAAGGAGTTCAATGCCAACAACATCCGTGACACCTTCCGTATCCTCCTCCAAATGAGCGTCGTCATGATGTTCGGTGGCCAAATGCCCGTCATCAAGGTGGGAAGAATGGCGGGGCAATTCGCCAAGCCTAGGTCGGATCCGTTTGAGGAGAAGAACGGCGTCAAGCTTCCCAGTTACAGAGGGGATAACGTTAACGGAGACGCGTTTGATGAGAAGTCAAGGATTCCGGATCCGCAGAGGATGATTCGGGCTTATTGTCAAGCTGCGGCTACGCTCAATCTTCTTAGGGCTTTTGCTACCGGAGGTTACGCGGCTATGCAGAGGGTTACTCAGTGGAATTTGGACTTCACCGAGCATAGTGAACAGGGAGATAGgtaccgagagcttgctaaccgagttgatgaggctcttggattcatggctgctgctgggctcacagtggaccatcccataatgacaacaactgaattctggacatcccatgaatgcttattgttgccttatgaacaaTCCCTCACTAGGTTGGATTCAACTTCTGGTCTCTACTATGACTGCTCAGCCCATATGCTTTGGGTTGGGGAACGAACCAGGCAGCTGGATGGTGCCCATGTTGAGTTTCTAAGAGGAGTTGCTAACCCCTTGGGAATTAAGGTAAGTGATAAGATGGATCCAAATGAGCTTGTTAAACTCATCGAGATCTTGAATCCTCAAAACAAACCAGGGAGAATAACTGTGATCACGAGGATGGGAGctgaaaatatgagggtgaagcttccacatctcattagggcagtgcgcagggcagggcaaattgtcacctgggtcagcgatcctatgcatggaaacaccataaaggctccatgtggtcttaaaactcgtcccttcgatgctATCAGGGCTGAAGTGAGAGCATTCTTCGATGTGCATGAGCAAGAAGGAAGCCACCCAGGAGGGGTTCATCTAGAGATGACGGGTCAAAATGTGACTGAGTGCATTGGTGGGTCAAGGACGGTCACATTTGATGACTTGAGCTCACGTTACCACACACACTGTGACCCAAGGCTCAATGCTTCACAATCTCTTGAGCTTGCTTTCATCATCGCTGAACGTTTGAGAAAGAGCAGGATCAGATCGCAGCAACCTCTTGCCTCTGATGGACTGTAA 1596 0.4292 MAISSTSNSLIPTKSLIHQTHPLIPSTNLRPALRPNHSPSPISAVHAADPAKNPLLTDKPKSQPPPPPPAARTLKWAVDSWKSKKALQLPDYPNQDDLHSVLRTLDAFPPIVFAGEARTLEERLGEAALGNAFLLQGGDCAESFKEFNANNIRDTFRILLQMSVVMMFGGQMPVIKVGRMAGQFAKPRSDPFEEKNGVKLPSYRGDNVNGDAFDEKSRIPDPQRMIRAYCQAAATLNLLRAFATGGYAAMQRVTQWNLDFTEHSEQGDRYRELANRVDEALGFMAAAGLTVDHPIMTTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGIKVSDKMDPNELVKLIEILNPQNKPGRITVITRMGAENMRVKLPHLIRAVRRAGQIVTWVSDPMHGNTIKAPCGLKTRPFDAIRAEVRAFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIIAERLRKSRIRSQQPLASDGL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01072 531 Gene3D Aldolase class I 274 517 IPR013785 -
Cca05g01072 531 Gene3D Aldolase class I 109 273 IPR013785 -
Cca05g01072 531 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 5 527 - -
Cca05g01072 531 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 5 527 IPR002480 GO:0003849|GO:0009073
Cca05g01072 531 SUPERFAMILY Aldolase 68 516 - -
Cca05g01072 531 TIGRFAM DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 76 518 IPR002480 GO:0003849|GO:0009073
Cca05g01072 531 MobiDBLite consensus disorder prediction 26 72 - -
Cca05g01072 531 Pfam Class-II DAHP synthetase family 76 512 IPR002480 GO:0003849|GO:0009073
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01072 Cca-Chr5 27605020 27609057 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01072 K01626 - gmx:100797019 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01072 05 27605020 27609057 Cca05g01072 05 27605020 27609057 ECH
Cca05g01072 05 27605020 27609057 Cca03g01250 03 29766280 29770106 PCT