Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01250 ATGGCTGGCACCGCTACCAACTCTCTCATTCCCACAAAAACACTACTCCCAAACCCAAACCATTCCCTCCTCCCTTCCTCCAACCTCAAAAGCAACAGCCAATGCTACTCTTCTTccaggcccaggcccaggcccatccaggccGTTCAGGCGGCGGAGAACAAGCCCGCAGCGAATGCAATCTCGGTGAGGCGCGAGACGACGAAATGGGCCGTGGACAGCTGGAAAACGAAAAAGGCCCTCCAGCTCCCGGAATATCCGGACCGGGAGAAGCTGCAGTCGGTGCTAAAGAGCCTGGAAACGTTCCCTCCAATCGTGTTCGCCGGAGAGGCCCGGAGCCTGGAGGAGCGGCTGGGCGAGGCCGCCATGGGGAGGGCCTTCCTCCTCCAGGGCGGGGACTGCGCCGAGAGCTTCAAGGAGTTTCACGCCAACAACATCCGCGACACCTTCCGAATCCTCCTCCAGATGAGCGTCGTCATGATGTTCGGCGGCCAGATGCCGGTGGGACGAATGGCGGGTCAGTTTGCGAAACCGAGATCGGGAGCGTTCGAGGAGAAGGACGGGGTGAAGCTCCCGGTTTACAGAGGAGATAATGTCAATGGAGATGCATTCGATGCCAAGATTAGGATTCCCGATCCTCAAAGGATGATCAGAGCGTATAGTCAATCCGCCGCCACGCTCAATCTTCTCAGGGCGTTTGCCACCGGAGGCTACGCTGCTATGCAGAGGGTTAGCCAATGGAATTTGGACTTCACGCAGCACAGCGAACAAGGAGACAGGCACcttgctcaccgagttgatgaggcccttggattcatggctgcttcaggcctcacggtggaccatcctataatgcaagcaactgagttctggacttcacatgaatgtttgttgttgccatatgaacaaacactCACTAGGTTGGATTCAACTTCTGGTCTCTACTATGATTGCTCCGCCCATATGCTTTGGGTTGGGGAACGGACTAGGCAGCTCGATGGTGCCCATGTTGAGTTTCTAAGAGGAGTTGCCAATCCCCTTGGAGTTAAGGTAAGTGATAAGCTAGATCCAAATGAGCTTGTTAAACTGATCGAGATCTTGAATCCCCAAAACAAACCCGGGAGAATAACTTTGATCACGAGGATGGGAGctgaaaatatgaggatcaagcttccacatctgatcagggcagtacgcagagccggacaaattgtaacttgggtcactgatcctatgcatgggaacaccataaaggctccgtgtggactcaaaactcgccccttcgATTCCATCATGGCGGAGGTGAAAGCATTCTTCGATGTGCATGAACAGGAAGGAAGCCACGCTGGTGGGATCCATCTTGAGATGACGGGTCAGAATGTGACTGAGTGCATTGGTGGGTCGAGGACAGTCACCTTTGATGATCTCAGCTCACGTTACCACACACACTGTGACCCTAGGCTCAATGCTTCACAATCTCTTGAGCTTGCTTTCATCATTTCTGCAAGGCTCAGAAAGAGTAGGATCGGATCGGAGCAACTCTTTCCTCAATAG 1554 0.4363 MAGTATNSLIPTKTLLPNPNHSLLPSSNLKSNSQCYSSSRPRPRPIQAVQAAENKPAANAISVRRETTKWAVDSWKTKKALQLPEYPDREKLQSVLKSLETFPPIVFAGEARSLEERLGEAAMGRAFLLQGGDCAESFKEFHANNIRDTFRILLQMSVVMMFGGQMPVGRMAGQFAKPRSGAFEEKDGVKLPVYRGDNVNGDAFDAKIRIPDPQRMIRAYSQSAATLNLLRAFATGGYAAMQRVSQWNLDFTQHSEQGDRHLAHRVDEALGFMAASGLTVDHPIMQATEFWTSHECLLLPYEQTLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGVANPLGVKVSDKLDPNELVKLIEILNPQNKPGRITLITRMGAENMRIKLPHLIRAVRRAGQIVTWVTDPMHGNTIKAPCGLKTRPFDSIMAEVKAFFDVHEQEGSHAGGIHLEMTGQNVTECIGGSRTVTFDDLSSRYHTHCDPRLNASQSLELAFIISARLRKSRIGSEQLFPQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01250 517 TIGRFAM DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 70 507 IPR002480 GO:0003849|GO:0009073
Cca03g01250 517 SUPERFAMILY Aldolase 60 505 - -
Cca03g01250 517 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2 31 513 IPR002480 GO:0003849|GO:0009073
Cca03g01250 517 Pfam Class-II DAHP synthetase family 70 501 IPR002480 GO:0003849|GO:0009073
Cca03g01250 517 PANTHER PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 2, CHLOROPLASTIC 31 513 - -
Cca03g01250 517 MobiDBLite consensus disorder prediction 1 44 - -
Cca03g01250 517 Gene3D Aldolase class I 241 506 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01250 Cca-Chr3 29766280 29770106 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01250 K01626 - gmx:100809016 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01250 03 29766280 29770106 Cca03g01250 03 29766280 29770106 ECH
Cca05g01072 05 27605020 27609057 Cca03g01250 03 29766280 29770106 PCT