Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01063 ATGGCCATGGTTAATTGCTTCTCTCGTTTTCCTGTGAGGAAGGAGAAACACAAGGGGAATGAAAGGTCTTCAAAAGAGGGCTTTCACACTCTACTTGCCAAACTACAACTACAATCTTCAACAATAACATCACGGCCAACCGCTTTTGATGTTACAGCACCCAAAGGTATTCAGAAAAATTCAACGTTCAATGTGAGGGTTACGAGTCTTGAGAGTACTGTGAAGGCTGAAGCACATAAAAGGGAAGATGAGGATGGAGATTCACCATTGATCAAGAGGGAACTCTCTGATTTTGATCTCCAAAATCAAGAAGCTGTTGCAAGCAAAGAAGGATATGATGCAACGGATAAAGAGAAAGAGTATCCCAATTTATATGAAAACCAAGTCAACAATGAATTGGAAGACAAAGACGATAGATACAGTCAAAAGAGTGTTGATACAACCAAAAGTGGGCATATCAGTGATCCTGGTTTTGGCAAAGCTGATGTCATGGCTTCTCCAAAGTTCAAGAGATACTTCTCTAACCTTGAAAAATTTGATGGGTATGGGCAGATAACTGCTCCTCGCTTGACTTCGATGTCAAAGTTTTCTAAGGATTTTCAAGAATTATCAGCAAAGGTTAATCTTGAAAGCCCCAGGTCTGTGATGAGTCACAACAGTGCTGATAGGGTGATGTTGAAAAGGCATTCTTCGAGTCAGGTAATCGCTTCTGGAAGTAAAAAAATGTGGTGGAAGATGATCCTGTGGAGCCACAGGAACATACGTAGAACTAGCAATTCAACACTAGTTCCTGCTAGTGCTGCTTTAAATAGTGGCTACTCTTCAGACACCCTTGAACCAAAACAAGACAAGGCATTGAGGACTGTGGAATCTTCTCAATCAATTACTATGGAATCCTTTAACAAAAGCAGCATTGGCAAAAATATTGATAACCAAAGGGGAAGCAGGTTTCATCAAAGTGACCAATGCATTGCTTTCTCAACAGAATCATCCTCTTTTGCCAGAGTGGATGCATGGGTGAAAGGTCTTGAAACTCAGCAACCATTTCTTGAGGATGATTTTGATGATGAAAACACCAGAAGCATTGTCTTCCCACCTTCTCCTGACGCTGGTGGATCAATGATGAGAACCTCATCTCAGTTGTCTTATCCAGATGCCAATCTTTCGAAAGAGGCTTCAAATGCCATCAGTGTAGTCCAGTCTCTAAATCCAGCTTCAACTATTGCTCACATATCTGGTATTGGTATCAAAGCTATCCCTGCTATTTCACACTTATCCAATCTCCGCGCTGTCAACTTGTCAAACAATTTCATAGTTCACATCTCGCCAGGATTTCTACCAAAGGGTATTCAAACACTTAACTTGTCAAGAAACAAGATCAGCACCCTGGAGGGCCTAAGGGAATTGACCAAGTTGCGGGTACTTGACCTAAGTTACAACCGCATCTCAAGAATTGGACAAGCGTTATCAAGTTGTACACTTATCAAAGAGCTATATCTTGTGGGGAACAAGATAAGTGATGTTGAGGGGCTACCAAGGCTATTGAAGCTAACAGTTCTAGACATGAGCTTCAACAAGATCACAACAACAAAAGCATTAGGCCAGCTAGTGGCTAACTACAACTCACTTCAGGCCCTTAATCTATTAGGAAACCCGATCCAAAGCAACATCAGTGATGATCAGCTGAACAAAGCAGTCTGTGGTCTTCTTCCAAAGCTGGTGTACCTGAACAAGCAACCCCTCAAGGCTCATAGGACACGCGAAATATTCAGTGATAGTCTTGCCAGAGCTGCCCTAGGGAACAGCACGCGGAGCTTCAATAGAAGATCACCAAGAAGAGTTGGCCATGGAGGATCAAGTCAATTCAGAGGACTTAGAAGAAATGTTTCCCAGATAAGCAGGAACCGGACAAGGAGGTGA 1920 0.4234 MAMVNCFSRFPVRKEKHKGNERSSKEGFHTLLAKLQLQSSTITSRPTAFDVTAPKGIQKNSTFNVRVTSLESTVKAEAHKREDEDGDSPLIKRELSDFDLQNQEAVASKEGYDATDKEKEYPNLYENQVNNELEDKDDRYSQKSVDTTKSGHISDPGFGKADVMASPKFKRYFSNLEKFDGYGQITAPRLTSMSKFSKDFQELSAKVNLESPRSVMSHNSADRVMLKRHSSSQVIASGSKKMWWKMILWSHRNIRRTSNSTLVPASAALNSGYSSDTLEPKQDKALRTVESSQSITMESFNKSSIGKNIDNQRGSRFHQSDQCIAFSTESSSFARVDAWVKGLETQQPFLEDDFDDENTRSIVFPPSPDAGGSMMRTSSQLSYPDANLSKEASNAISVVQSLNPASTIAHISGIGIKAIPAISHLSNLRAVNLSNNFIVHISPGFLPKGIQTLNLSRNKISTLEGLRELTKLRVLDLSYNRISRIGQALSSCTLIKELYLVGNKISDVEGLPRLLKLTVLDMSFNKITTTKALGQLVANYNSLQALNLLGNPIQSNISDDQLNKAVCGLLPKLVYLNKQPLKAHRTREIFSDSLARAALGNSTRSFNRRSPRRVGHGGSSQFRGLRRNVSQISRNRTRR 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01063 639 SMART LRR_typ_2 469 492 IPR003591 -
Cca05g01063 639 SMART LRR_typ_2 514 536 IPR003591 -
Cca05g01063 639 SMART LRR_typ_2 425 447 IPR003591 -
Cca05g01063 639 MobiDBLite consensus disorder prediction 130 145 - -
Cca05g01063 639 PANTHER NISCHARIN RELATED 3 638 - -
Cca05g01063 639 MobiDBLite consensus disorder prediction 602 639 - -
Cca05g01063 639 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 3 638 - -
Cca05g01063 639 SMART LRR_sd22_2 492 513 - -
Cca05g01063 639 SMART LRR_sd22_2 469 491 - -
Cca05g01063 639 SMART LRR_sd22_2 514 535 - -
Cca05g01063 639 SMART LRR_sd22_2 447 468 - -
Cca05g01063 639 ProSiteProfiles Leucine-rich repeat profile. 471 493 IPR001611 GO:0005515
Cca05g01063 639 Gene3D Ribonuclease Inhibitor 492 586 IPR032675 -
Cca05g01063 639 MobiDBLite consensus disorder prediction 357 379 - -
Cca05g01063 639 ProSiteProfiles Leucine-rich repeat profile. 449 470 IPR001611 GO:0005515
Cca05g01063 639 Pfam Leucine rich repeat 426 482 IPR001611 GO:0005515
Cca05g01063 639 ProSiteProfiles Leucine-rich repeat profile. 494 515 IPR001611 GO:0005515
Cca05g01063 639 MobiDBLite consensus disorder prediction 102 153 - -
Cca05g01063 639 SUPERFAMILY Outer arm dynein light chain 1 414 578 - -
Cca05g01063 639 Pfam Leucine Rich repeat 516 528 IPR001611 GO:0005515
Cca05g01063 639 Gene3D Ribonuclease Inhibitor 367 491 IPR032675 -
Cca05g01063 639 ProSiteProfiles Leucine-rich repeat profile. 516 537 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01063 Cca-Chr5 27412149 27415895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01063 420 581 Receptor kinase-like Gene Family AT5G56040 32.222 2.35e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01063 - - ccaj:109809309 1211.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01063 05 27412149 27415895 Cca05g01063 05 27412149 27415895 ECH
Cca05g01063 05 27412149 27415895 Cca03g01240 03 29576818 29580682 PCT