Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01240 ATGGCCTTGTGTGGGTGTCTCTCTTTTTTGAGTGGAAAGAAGGAGAAAAACAAGGGTACTGAACGGTCTTCAACAGGGGAGCTTAAAGCTCAACTTGACCAAGTATTGCACCCAAAGATTTCACCAGAGAGTCATGATTTGAAGCCAGCCACCCTTGATGTTACAGTACCCTGTGGTGTGCAGAAGAATTCAAAGGGCAATGTGAGGGTTATGAGTCTTGAGAGTCCTGTgaagacggaagtggaagaggcttatgaaggggaagatgagcatgaagagTCACCTTCCATCAAGAGGGAGTTCTCTGATTTTGATCTCCAAGTCCACGAAGAGGCTGCAAGCAAAGGAGGATGTGATCCATCAAATGAAGAGGTAAAGTACCCAAGTTTAAATGAAAACCAATCCAACATTCAATTGCAAGACCATGAATACAGCAAAAAGAGTGTTGATCTAATCCAAAGTGGACATGTCAGTGATCCTGGGATTGGCAAGGCTGACTTTTTGGCTTCTCCAAAGCTCAAGCGATCCTGCTCTGACCTGGAAAGAAGGGATGTACTTAGGGAGACTTCTCATCTCTTTCCATCCTCTAAGTCACAGTCTTTTGAGGATTTGCAGGAATTATCTGCATATCACAAGGTTAATCTAGAAAGCCCCAGGTCTGTGATGACTCACTGCAGTGCTGATAGAGTGATGTTGAAAAGGCATTCTTCAAGTCAAGTTCTCCCTTCTAGAAGTAAAAGATTGTGGTGGAAGTTGTTCCTCTGGAGCCACAGGAATATACATAGATCTCAGTTAAGCAAATCGACACAAATACATCCTACAGTTGCTGCTTTAAATAGTCAATGTGGGTACTCCTCAGACACCCTTGAACCAAAACAGGGCAAGGCATTGAGACATGTGGAATCAATCTCTCCGAGCTCATCTTTTGGGGAACACTTTCACGGAAATATTGATAACCAAAGGTGGAGCAGATTTCAGAAAGAAAATTTTGGTGTTTGGCCACAAAATCAATGGGTGGCTTTCTCAACAGAATCATCCTCCTTAAGCAGAGTGGATGAGTGGGTGAAAGATCTCGAAATTCAGCAGCCTCCTCCTGAGGATGATTTTGATGATGACAATATTGGAAGCATTACCTTCCCACCTTCTCCTGATGCCACCCCACAATTCATAGCATCCTCAAGCACAGCTCAGTTGGCTCGATATCCAGATGCCAATCTTTCAAAAGAGATATTGAATGCCAACACTGTGGTTCAGTCCCTGAACCCAGCCTCAACTACAGCTCATATATCAGGCATTGGTATAAAAGCCATCCCTTCTATTTCACACTTCTCCACTCTCCGCTCTGTCAATTTGTCTAGCAATCTCATAGCTCACATCACGCCTGGATTTCTCCCAAAGGGTATTCATACACTGAATTTGTCAAGAAACAAAATCAGCACCATTGAGGGCCTCAGAGAATTAACTCGGCTGCGGGTACTTGACTTGAGTTATAATCGCATCTCAAGAATTGGACAAGGTTTATCAAATTGTACACTAGTTAAAGAGCTATATCTTGCGGGAAACAAGATAAGTGATGTTGAGGGGCTACACAGGTTTTTGAAGCTCACGGTTTTGGACTTGAGCTTTAACAAGATTGCGACAAGCAAAGCGTTAGGCCAGCTGGTGGCCCACTACAACTCACTTCAGGCTCTGAATCTGCTTGGAAATCCAATTCAAAGCAACATCAGTGATGACCAGCTGCGCAAAGCAGTTTGTGGTCTTCTTCCAAAGCTTGTGTACCTGAACAAGCAATCTATCAAGCCTCAAAGGGGACGAGAAATACACACCGATAGTGTTGCCAAAGCTGCACTTGGGAACAGCAGCCGGAGCTCGTACAGGAGAGCACTAAAGAAAGGTGGTGGCCAAGGAGGGTCAAGTTCCTCCACTGTGCATAGAAGCATTTCTAGTGTTTCCCATAAAAGCAGGAACAGGTCAAGGAGCCGATCTAAACATCATTAG 1998 0.4314 MALCGCLSFLSGKKEKNKGTERSSTGELKAQLDQVLHPKISPESHDLKPATLDVTVPCGVQKNSKGNVRVMSLESPVKTEVEEAYEGEDEHEESPSIKREFSDFDLQVHEEAASKGGCDPSNEEVKYPSLNENQSNIQLQDHEYSKKSVDLIQSGHVSDPGIGKADFLASPKLKRSCSDLERRDVLRETSHLFPSSKSQSFEDLQELSAYHKVNLESPRSVMTHCSADRVMLKRHSSSQVLPSRSKRLWWKLFLWSHRNIHRSQLSKSTQIHPTVAALNSQCGYSSDTLEPKQGKALRHVESISPSSSFGEHFHGNIDNQRWSRFQKENFGVWPQNQWVAFSTESSSLSRVDEWVKDLEIQQPPPEDDFDDDNIGSITFPPSPDATPQFIASSSTAQLARYPDANLSKEILNANTVVQSLNPASTTAHISGIGIKAIPSISHFSTLRSVNLSSNLIAHITPGFLPKGIHTLNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGQGLSNCTLVKELYLAGNKISDVEGLHRFLKLTVLDLSFNKIATSKALGQLVAHYNSLQALNLLGNPIQSNISDDQLRKAVCGLLPKLVYLNKQSIKPQRGREIHTDSVAKAALGNSSRSSYRRALKKGGGQGGSSSSTVHRSISSVSHKSRNRSRSRSKHH 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01240 665 ProSiteProfiles Leucine-rich repeat profile. 489 511 IPR001611 GO:0005515
Cca03g01240 665 SMART LRR_typ_2 443 465 IPR003591 -
Cca03g01240 665 SMART LRR_typ_2 532 554 IPR003591 -
Cca03g01240 665 SMART LRR_typ_2 487 510 IPR003591 -
Cca03g01240 665 ProSiteProfiles Leucine-rich repeat profile. 534 555 IPR001611 GO:0005515
Cca03g01240 665 PANTHER NISCHARIN RELATED 5 664 - -
Cca03g01240 665 MobiDBLite consensus disorder prediction 618 665 - -
Cca03g01240 665 MobiDBLite consensus disorder prediction 634 649 - -
Cca03g01240 665 MobiDBLite consensus disorder prediction 650 665 - -
Cca03g01240 665 SUPERFAMILY Outer arm dynein light chain 1 432 600 - -
Cca03g01240 665 ProSiteProfiles Leucine-rich repeat profile. 467 488 IPR001611 GO:0005515
Cca03g01240 665 PANTHER OUTER ARM DYNEIN LIGHT CHAIN 1 PROTEIN 5 664 - -
Cca03g01240 665 SMART LRR_sd22_2 465 486 - -
Cca03g01240 665 SMART LRR_sd22_2 510 531 - -
Cca03g01240 665 SMART LRR_sd22_2 532 553 - -
Cca03g01240 665 SMART LRR_sd22_2 487 509 - -
Cca03g01240 665 Gene3D Ribonuclease Inhibitor 508 604 IPR032675 -
Cca03g01240 665 Gene3D Ribonuclease Inhibitor 384 507 IPR032675 -
Cca03g01240 665 Pfam Leucine Rich repeat 534 545 IPR001611 GO:0005515
Cca03g01240 665 Pfam Leucine rich repeat 445 500 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01240 Cca-Chr3 29576818 29580682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01240 438 564 Receptor kinase-like Gene Family AT4G08850 34.058 2.64e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01240 - - gmx:100810094 1068.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01240 03 29576818 29580682 Cca03g01240 03 29576818 29580682 ECH
Cca05g01063 05 27412149 27415895 Cca03g01240 03 29576818 29580682 PCT