Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01060 ATGTCAGGTGGTGGATGCAGCATAGTGTGGTTCAGGAGAGATCTGAGGGTGGAGGATAACCCTGCACTGGCTGCAGGAGTGAGAGCAGGTGCAGTGGTTGCTGTTTTCATATGGGCTCCTGAAGAAGAGGGTCAATACTACCCTGGTAGGGTCTCTAGGTGGTGGCTCAAACAAAGCTTGGCTCACCTTGATTCCTCTTTGAGAAGCCTTGGCACTCCTCTTATCACCAAACGTTCCACTAATAGTGTTTCTTCTTTGTTGGAGGTTATTAAGTCCACTGGGGCTACTCAACTCTTTTTCAACCATTTATATGATCCGTTGTCACTTGTGAGGGATCACAGAGCAAAGGAGGTTCTGACTGCTCAAGGAATTGTCGTACGTTCCTTCAACTCGGACTTATTGTATGAACCATGGGATGTGAATGACGCTCATGGCCAACCATTCACAACTTTTTCTGCTTTTTGGGAAAGATGCCTTAGCATGCCTTATGACCCACAAGCACCTCTTCTCCCACCTAAAAGAATTATTCCAGGTGATGTGTCAAGGTGCCCTGGTGACACATTGGTGTTTGAAGACGAATTAGAGAAAGCAAGCAATGCGCTTCTTGCGCGAGCATGGTCACCGGGGTGGAGCAATGCTGACAAGGCATTAACAACATTCATAAATGGTCCTCTGATCGAGTACTCAAAGAATCGCAGGAAGGCTGACAGTGCCACAACCTCATTTCTCTCGCCACATTTGCACTTTGGTGAGGTGAGTGTGAAGAAAGTGTTCCACCTCGTCCGCATCAAGCAAGTGTTTTGGGCCAACGAAGGAAACAAGGCTGGTGAAGAGAGTGTGAACTTGTTTCTCAAGTCCATTGGTCTTAGAGAGTATTCAAGGTACATTAGTTTCAACCACCCTTATAGTCACGAAAGGCCTCTTCTAGGACACCTTAAGTTTTTCCCTTGGGTGGTGAATGAAGGGTACTTTAAGGCTTGGAGACAAGGCAGAACAGGGTACCCTTTGGTGGATGCTGGAATGAGAGAGTTGTGGGCAACTGGTTGGTTGCATGATCGGATACGTGTTGTGGTTTCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGGATGAAGTATTTTTGGGATACCCTTTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAATACATATCTGGTACTCTTCCTGATGGTCGCGAATTTGACCGAATAGATAATCCACAGTTCGAGGGTTACAAATGTGACCCAAATGGAGAATATGTAAGACGCTGGCTTCCTGAACTTGCTAGATTACCAACTCAATGGATACACCATCCATGGAATGCGCCTGAGTCAGTACTCCAAGCTGCTGGAATTGAACTTGGATCAAACTACCCTCTTCCCATTGTGGGAATAGATGCAGCAAAAGTAAGACTGCAAGAAGCACTTATACAAATGTGGCAACAAGAAGCAGCTTCTAGAGCTGCAATGGAAAATGGAACTGAGGAAGGGCTTGGAGACTCATCTGAATCAGCCCCTATTGCTTTTCCTCAAGACATTCAAATGGAGGAAAGACTTGAACCTGTTAGGAACAACCCACCTCACGGCACACGGCGCTATGAGGATCAGATGGTGCCAAGTATCACTTCTTCACATGTGCGAGTGGAAGAGGAAGAAACATCTTCAGACCTTCGAAACTCGGCTGCAGACAGCAGAGCTGAAGTGCCTATAAATGTGAACACACAACCGGATGCAAGAGGGACAGTGAATCAAGGAGCGTTGCAGAATGTAAATAGAAACACAAGAGTACAGAATAATGCTAATGCTACAATGTGGTTGAGAAATGCGGCTGAAGATTCCACAGCAGAGTCTTCAAGTAGTACTAGGAGAGAAAGGGATGGGGGTGAAGTTCCAGTGTGGTCTCCCCCAGCTTCTAACTTCTCAGAACAGTTTGTAGATGATGAAAATGGTATAGGAGCCAGTTCATCTTACTTGCAGAGGCAGCATCCTCAGTCTCATCAATTGATGAACTGGACACGGCTACCTCAGACTGGGTGA 2052 0.4639 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKQSLAHLDSSLRSLGTPLITKRSTNSVSSLLEVIKSTGATQLFFNHLYDPLSLVRDHRAKEVLTAQGIVVRSFNSDLLYEPWDVNDAHGQPFTTFSAFWERCLSMPYDPQAPLLPPKRIIPGDVSRCPGDTLVFEDELEKASNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVFWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKCDPNGEYVRRWLPELARLPTQWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKVRLQEALIQMWQQEAASRAAMENGTEEGLGDSSESAPIAFPQDIQMEERLEPVRNNPPHGTRRYEDQMVPSITSSHVRVEEEETSSDLRNSAADSRAEVPINVNTQPDARGTVNQGALQNVNRNTRVQNNANATMWLRNAAEDSTAESSSSTRRERDGGEVPVWSPPASNFSEQFVDDENGIGASSSYLQRQHPQSHQLMNWTRLPQTG 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01060 683 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Cca05g01060 683 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Cca05g01060 683 MobiDBLite consensus disorder prediction 641 683 - -
Cca05g01060 683 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 488 IPR036134 -
Cca05g01060 683 Pfam DNA photolyase 7 163 IPR006050 -
Cca05g01060 683 MobiDBLite consensus disorder prediction 543 683 - -
Cca05g01060 683 MobiDBLite consensus disorder prediction 571 621 - -
Cca05g01060 683 PRINTS DNA photolyase signature 143 159 IPR002081 -
Cca05g01060 683 PRINTS DNA photolyase signature 332 348 IPR002081 -
Cca05g01060 683 PRINTS DNA photolyase signature 352 370 IPR002081 -
Cca05g01060 683 PRINTS DNA photolyase signature 391 405 IPR002081 -
Cca05g01060 683 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Cca05g01060 683 Gene3D HUPs 8 206 IPR014729 -
Cca05g01060 683 PANTHER CRYPTOCHROME-1 1 600 - -
Cca05g01060 683 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Cca05g01060 683 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 481 IPR014134 GO:0009785|GO:0009882
Cca05g01060 683 PANTHER CRYPTOCHROME 1 600 IPR002081 -
Cca05g01060 683 Pfam Blue/Ultraviolet sensing protein C terminal 510 627 IPR020978 -
Cca05g01060 683 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Cca05g01060 683 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Cca05g01060 683 Gene3D - 134 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01060 Cca-Chr5 27383691 27390484 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01060 K12118 - gmx:100815428 1313.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01060 05 27383691 27390484 Cca05g01060 05 27383691 27390484 ECH
Cca05g01060 05 27383691 27390484 Cca03g01236 03 29493847 29503424 PCT