Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01236 ATGTCAGGTGGTGGATGCAGCATAGTGTGGTTTAGAAGAGATCTGAGGATAGAGGACAACCCTGCACTGAGTGCAGGTGTGAGAGCTGGAGCTGTGGTGGCAGTTTTCATATGGGCACCTGAAGAAGAAGGCCAATACTACCCTGGCAGGGTCTCTAGGTGGTGGCTCAAACACAGTTTGGCACACCTTGATTCCTCTTTGAGGAATCTAGGAACTCCTCTCATCACTAAGAGATCCACTGACACTGTTTCTTCTCTTCTTGAGGTTGTTAAGTCCACTGGGGCTACTCAGCTCTTCTTTAATCATTTATATGATCCCCTGTCACTTATCAGGGATCACCGAGCAAAAGAGGTTCTGAATGCTCAGGGTGTAACAGTACGTTCCTTCAATGCGGATTTACTATATGAACCATGGGATGTGAATGATGCACATGGACGACCGTTCACAACTTTTGCTGCTTTTTGGGAAAGATATCTTAGCATGCCTTATGACCCCGAGTCACCTCTTCTCCCACCTAAAAGGATAATACCAGGTGATGTATCGAGGTGCCCAAGTGATACATTGGTGTTTGAAAATGAAGCGGAGAAGGCAAGCAATGCACTTCTAGCTCGAGCATGGTCACCTGGGTGGAGCAATGCAAACAAGGCATTAACCGCATTCATAAATGGTCCACTGATCGAGTACTCAAAAAATCGCAGGAAAGCTGACAGCGCCACTACCTCACTCCTCTCACCCCATTTACATTTTGGCGAGTTGAGTGTGAAGAAGGTCTTCCATCTTGTCCGCATCAAACAAGTCTTATGGGCCAACGAAGGGAACATAGCGGGTGAAGAAAGCGTGAACTTGTTCCTCAAATCTGTAGGTCTTAGAGAGTATTCAAGGTACATTAGTTTCAACCACCCCTACAGTCATGAAAGGCCTCTTCTAGGCCACCTTAAGTTCTTTCCTTGGGTTGTGAATGAAGGCTATTTTAAGGCATGGAGACAAGGCAGAACTGGGTACCCTTTGGTGGATGCTGGGATGAGGGAGTTGTGGGCCACTGGTTGGCTGCATGATCGGATACGTGTTGTGGTTTCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAGTACTTCTGGGATACCCTTTTGGATGCAGATCTTGAGAGTGATGCACTTGGTTGGCAGTACATATCTGGTACTCTACCTGATGGTCGTGAATTTGACCGAATAGATAATCCACAGTTTGAGGGCTACAAATTTGACCCCCATGGAGAATATGTACGACGCTGGCTTCCAGAACTTGCAAGATTGCCTACTGAGTGGATACATCATCCTTGGAATGCACCAGAATCAGTGCTACAAGCTGCTGGAATTGAGCTAGGATCGAATTATCCTCTTCCAATTGTGGGAATAGATGCAGCAAAAACCAGACTACAAGAGGCACTATCAGAAATGTGGCAACTAGAAGTAGCTTCAAGAGCTGCAATGGAAAATGGGACTGAGGAAGGACTTGGAGACTCTTCTGAATCAGTTCCTGCTGCTTTTCCTCAAGACATGCAAATGGAGGAAACTCATGAACCGGTTAGGCACAATCCCCTTCCGGTTGCTCGGCGCTACCAGGATCAGATGGTTCCAAGCATCACTTCTTCCTTTGTGAGAGTGGAAGAGGAAGAAACTACATCTGATCTTCGAATCTCGGCAGAAGAGAGCAGCAGGGCTGAAGTGCCAGTAAATGTAAACACACAACAAAATGCAGGAGTTACGTTGAACGAACGGATGTTGCAGACTGCTCATAGGaatacacaaatacaatacaatactacaatGGAGCTGATAAATGTAGCTGAAGATTCAGCAGTTGAATCTTCAAGTGGTACCAGGAGAGAAAGGGATGGAGGTTTAGTTCCAGTATGGTCTCCCCCAGCTTCCAGTTATTCAGAACAATTTGTTGGAGATGAAAATGGTATTACTAGCAGTTCATCTTACTTGCAAAGGCACCCTCAGTCTCACCAATTGCTGAATTGGAGACAGCTACCTCAAACCGGGTAA 2046 0.457 MSGGGCSIVWFRRDLRIEDNPALSAGVRAGAVVAVFIWAPEEEGQYYPGRVSRWWLKHSLAHLDSSLRNLGTPLITKRSTDTVSSLLEVVKSTGATQLFFNHLYDPLSLIRDHRAKEVLNAQGVTVRSFNADLLYEPWDVNDAHGRPFTTFAAFWERYLSMPYDPESPLLPPKRIIPGDVSRCPSDTLVFENEAEKASNALLARAWSPGWSNANKALTAFINGPLIEYSKNRRKADSATTSLLSPHLHFGELSVKKVFHLVRIKQVLWANEGNIAGEESVNLFLKSVGLREYSRYISFNHPYSHERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFDPHGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKTRLQEALSEMWQLEVASRAAMENGTEEGLGDSSESVPAAFPQDMQMEETHEPVRHNPLPVARRYQDQMVPSITSSFVRVEEEETTSDLRISAEESSRAEVPVNVNTQQNAGVTLNERMLQTAHRNTQIQYNTTMELINVAEDSAVESSSGTRRERDGGLVPVWSPPASSYSEQFVGDENGITSSSSYLQRHPQSHQLLNWRQLPQTG 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01236 681 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Cca03g01236 681 MobiDBLite consensus disorder prediction 640 681 - -
Cca03g01236 681 Pfam Blue/Ultraviolet sensing protein C terminal 511 626 IPR020978 -
Cca03g01236 681 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Cca03g01236 681 PRINTS DNA photolyase signature 143 159 IPR002081 -
Cca03g01236 681 PRINTS DNA photolyase signature 332 348 IPR002081 -
Cca03g01236 681 PRINTS DNA photolyase signature 352 370 IPR002081 -
Cca03g01236 681 PRINTS DNA photolyase signature 391 405 IPR002081 -
Cca03g01236 681 PANTHER CRYPTOCHROME 1 598 IPR002081 -
Cca03g01236 681 Pfam DNA photolyase 7 161 IPR006050 -
Cca03g01236 681 Gene3D HUPs 8 206 IPR014729 -
Cca03g01236 681 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Cca03g01236 681 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Cca03g01236 681 Pfam FAD binding domain of DNA photolyase 283 481 IPR005101 -
Cca03g01236 681 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 194 487 IPR036134 -
Cca03g01236 681 Coils Coil 470 490 - -
Cca03g01236 681 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 482 IPR014134 GO:0009785|GO:0009882
Cca03g01236 681 MobiDBLite consensus disorder prediction 618 681 - -
Cca03g01236 681 Gene3D - 134 293 - -
Cca03g01236 681 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Cca03g01236 681 PANTHER CRYPTOCHROME-1 1 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01236 Cca-Chr3 29493847 29503424 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01236 K12118 - gmx:100233233 1313.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01236 03 29493847 29503424 Cca03g01236 03 29493847 29503424 ECH
Cca05g01060 05 27383691 27390484 Cca03g01236 03 29493847 29503424 PCT