Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01054 ATGAGATACCAAGACCTAGCACCGTCCTTCAACTCTTTTCCCAATCCTAATAACGCTCTCAACAACCTTCACCGTCGCCACGTCGCCTCCCACACTTCCGCTGCCTTCCACGATGTTGATGTGTTGTTATCTAATGATTTTTCTAGAATGAGTGTTTTTCATGAACAAGGAAATCTAAATGTTAATGTTATGGACTCACTCTCACGCTCACCTCACACACAATGTTCCTCTGATGTGAGGGGACATGTTCAACTGCAGAATGAGAATCCATTATTTCATGCTTCTAATTGCAATAAGAGAACAATGGACTCTCATGTCACAACTCCCTTTATGTTATCTCAACCCAACCGTCTTACCACAAACACTAACACTCCATCTTCACATTATTTCACTGCAGCAACAAGCGACAGTGAATTTTCCCACTCTAGAGGGGACCCTGTAATATTCCAATGTGACAGTGTCAGTGGTTTTATCATGCAAGACAAGGATGTCAAGTGTTGTGTTGGTGGTAGAGGGAGCGATTCTTTGTTGGGTTGCAATGAGGCTTTACCTTTTCCTCGACTCGTTTCTTCTGCCAGACGTGAAAAGAGTAGCATTCTCGCGAGTCTCTCTCCTTGGCCCTTGTTCAACTTTGCTCCTTTGGCTAAGTTCCAAGGTTACATTTATCGCCTGGCCAAGGATCAGAACGGTTGTCGCTTCTTGCAGAGGATAGTTGATGAGGGTACCTCTGAAGATGCGCAAATAGTGTTTAATGGAGTCATAGATGATGTTGTGGAGCTTATGATGGACCCTTTTGGGAACTACCTTGTGCAAAAGTTGCTTGATGTGTGTGGAGAGCATCAAAGGTTGCAGCTTGTGTCAATGCTGACTAAAGAACCAGGCCAGCTAGTCAGAACATCTTTGAATACACACGGCACAAGGGTGGTTCAGAAGTTGATTGCCACTGTCAACTCTAGAAAACAATTTGTGATGCTGAGGTCTGCCATTCAACCTGGTTTTCTTGATCTTATAAAGGATCTCAATGGAAATCATGTCATACAGCGTTGCTTGCAATACTTTAGCTGTAAAGATAATGAGTTTATTTTTGATGCTGCTACAAAGTTCTGTGTAGATATAGCCACTCATCAACATGGGTGTTGTGTATTACAACGTTGCATTGATTATTCCACCGGAAAGTACCAAGATAAACTGGTAAAAGAAATATGCAGACATGGGCTTATCCTTGCTCAAGATCCATTTGGAAATTATGTTGTTCAGTATATTATAGAGATGGAGGATCCAAATCTGTCAAGCAAATTGCATTCTCAGTTCAAAGGGAACTACGTAAACCTCTCAATGCAAAAATTTAGCAGTCATGTAGTTGAAAAATGCCTCATGCATGTTGCAGAGAGCAGGTCAAGGATAGTCCAAGAATTGTTGTCTTTTCCTAACTTTGAGCGGTTGCTACCAGACCCATACGCTAACTATGTTGTTCAACGTGCTCTCGGAGTAACCAAGGGTTCTCTGCATTCTTCTCTGGTAGAAGCAGTTCGTCCCCACAAAATCTTGCGCACCAGTCCTTATTGCAAAAGAATTTTCTCCAGGAACCTACTTAATAAGTGA 1602 0.4226 MRYQDLAPSFNSFPNPNNALNNLHRRHVASHTSAAFHDVDVLLSNDFSRMSVFHEQGNLNVNVMDSLSRSPHTQCSSDVRGHVQLQNENPLFHASNCNKRTMDSHVTTPFMLSQPNRLTTNTNTPSSHYFTAATSDSEFSHSRGDPVIFQCDSVSGFIMQDKDVKCCVGGRGSDSLLGCNEALPFPRLVSSARREKSSILASLSPWPLFNFAPLAKFQGYIYRLAKDQNGCRFLQRIVDEGTSEDAQIVFNGVIDDVVELMMDPFGNYLVQKLLDVCGEHQRLQLVSMLTKEPGQLVRTSLNTHGTRVVQKLIATVNSRKQFVMLRSAIQPGFLDLIKDLNGNHVIQRCLQYFSCKDNEFIFDAATKFCVDIATHQHGCCVLQRCIDYSTGKYQDKLVKEICRHGLILAQDPFGNYVVQYIIEMEDPNLSSKLHSQFKGNYVNLSMQKFSSHVVEKCLMHVAESRSRIVQELLSFPNFERLLPDPYANYVVQRALGVTKGSLHSSLVEAVRPHKILRTSPYCKRIFSRNLLNK 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01054 533 CDD Pumilio 219 528 IPR033712 GO:0003723
Cca05g01054 533 Pfam Pumilio-family RNA binding repeat 221 251 IPR001313 GO:0003723
Cca05g01054 533 Pfam Pumilio-family RNA binding repeat 440 473 IPR001313 GO:0003723
Cca05g01054 533 Pfam Pumilio-family RNA binding repeat 296 318 IPR001313 GO:0003723
Cca05g01054 533 Pfam Pumilio-family RNA binding repeat 408 427 IPR001313 GO:0003723
Cca05g01054 533 Pfam Pumilio-family RNA binding repeat 257 289 IPR001313 GO:0003723
Cca05g01054 533 Pfam Pumilio-family RNA binding repeat 369 402 IPR001313 GO:0003723
Cca05g01054 533 Pfam Pumilio-family RNA binding repeat 333 363 IPR001313 GO:0003723
Cca05g01054 533 Pfam Pumilio-family RNA binding repeat 484 495 IPR001313 GO:0003723
Cca05g01054 533 ProSiteProfiles Pumilio RNA-binding repeat profile. 364 399 IPR001313 GO:0003723
Cca05g01054 533 ProSiteProfiles Pumilio RNA-binding repeat profile. 216 251 IPR001313 GO:0003723
Cca05g01054 533 SMART pum_5 328 363 IPR001313 GO:0003723
Cca05g01054 533 SMART pum_5 473 508 IPR001313 GO:0003723
Cca05g01054 533 SMART pum_5 400 434 IPR001313 GO:0003723
Cca05g01054 533 SMART pum_5 436 470 IPR001313 GO:0003723
Cca05g01054 533 SMART pum_5 364 399 IPR001313 GO:0003723
Cca05g01054 533 SMART pum_5 252 287 IPR001313 GO:0003723
Cca05g01054 533 SMART pum_5 291 326 IPR001313 GO:0003723
Cca05g01054 533 SMART pum_5 216 251 IPR001313 GO:0003723
Cca05g01054 533 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 195 533 IPR033133 GO:0003723
Cca05g01054 533 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 69 533 - -
Cca05g01054 533 ProSiteProfiles Pumilio RNA-binding repeat profile. 328 363 IPR001313 GO:0003723
Cca05g01054 533 PANTHER PUMILIO-FAMILY RNA-BINDING REPEATPROTEIN 69 533 - -
Cca05g01054 533 SUPERFAMILY ARM repeat 214 527 IPR016024 -
Cca05g01054 533 Gene3D - 204 531 IPR011989 -
Cca05g01054 533 ProSiteProfiles Pumilio RNA-binding repeat profile. 400 435 IPR001313 GO:0003723
Cca05g01054 533 ProSiteProfiles Pumilio RNA-binding repeat profile. 252 287 IPR001313 GO:0003723
Cca05g01054 533 ProSiteProfiles Pumilio RNA-binding repeat profile. 288 326 IPR001313 GO:0003723
Cca05g01054 533 ProSiteProfiles Pumilio RNA-binding repeat profile. 471 508 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01054 Cca-Chr5 27292264 27297599 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01054 - - pvu:PHAVU_008G173000g 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01054 05 27292264 27297599 Cca05g01054 05 27292264 27297599 ECH
Cca05g01054 05 27292264 27297599 Cca03g01230 03 29239332 29243001 PCT