Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01230 ATGGCCGTGCCAATGCGGAAGATGACAATGTCAGAGGATAAGAGAGGCACAGCAGAGGAGGCAGAAGCCAGGTTCGTTGGGATTCCCAATGCACCCACGCAAACCCCAACACCGCCGCCGCCGCCGTGTCTCCGCGTCCTTCACCCTGATCATGTGGCCGTTGGCTCCCCCATCACCAGGGTCCCTCTCGTTCCTTCTTCCACATCTTATTCACTGCCGCCATCCTCTACTCTCACTGACCCCATGTGGGCCCATGATCTCCCCAACGATTTTTCCAGGTTGAATCTCTTCGACGGGGAAATCGACTCTTACCCTCATCACCACCACAACACCGCTTTATTCGAAAAAGGTTTTACTTTTTCCTCCCCAGATAACCTCGGAAACTACATGTACCATCATATCTTGGACCAGAGGAGAAAACACCTTCAGGGCACCAGTGGTGCAAATGCAAACTATCAGATTCTTCGGGATCGTTTCGTCTCTCCGCAGTCTCACGGAGGAGTCAGAACGCCGGTTAGGTTCTCTCCATTGAATTCCACTGCCAATAACAATCCCTCGCATTATTACTACGCCGCAAAAGAAAAGGCATCCATAGACTCGGAGCAGCTTTCACATGTTATATCTCCGAGGAGAGTCGTGGGTGACCCTTCTGGGTATAGGTGTGACAATAGTATCATCATACAAGGGAGAGAAGCAAAACAGTGTTTTGAGAACGGGTACAGTTCCACCAGGGGCTTTAGAAGGAGTCCCCGTGATGAGGCTTCTATTCATGGCGTGGGTCCTAAGAGCTTTTctgctgctgctgctgctgctgcttctgGTCAAAATCAGAACAATGGTGATTTCACACTGCCCATGCTGCTGGATTTTTATTCTGTGCCTGACGCTCAGTGTTACATATACAACCTGGCTAAGGATCAAAACGGTTGTCGTTTTCTGCAGCGGTTGGTTGACGAAGGAACCTACCAAGATATGTGTATGGTGTTTGAGGGAATCATTGGGAGTGTGGTTGAACTTATGATAGACTCTTTCGGGAATTATCTTGTGCAGAAGTTGCTCGATGTTTGCACCGATCAACAACGCCTGCAGATTGTGTTCATGTTGACGAATCAACCGGGCCAGCTCGTTCGCATCTCTTTAAATACTCATGGCACACGCGTGGTGCAGAAGTTGATCGAAACGCTCAACTCCGCCGAACAAGTTTCAATGGTGAAGTCTGCCATTCAACCTGGTTTTCTTGATCTAATTAGGGATCTGAATGGAAATCACGTCATTCAACGTTGCTTGCAATGCCTTAGCTGTCAAGATAATCAATTTATTTTTGATGCTGCTGTGAAGTTTTGTGTTGAGATAGCTACTCATCGACATGGATGTTGTGTGATGCAACGCTGCATTGATTACTCTGTGGGGAAGAATCGAGATAAGTTGGTTACAGAAATATGCAAACATGGACTTCTCCTCTCACAGGATCCATTTGGAAACTATGTTGTTCAATATGTTATAGAGATGGATACTCCGGCTGCTTCAGCCAAACTGCTTGGTCTGTTTAAAGGGAATTATGTAAATTTGTCTACTCAAAAATTCAGCAGTCACGTGGTTGAAAAATGTCTTAAGCATATTGGTGACACTAGATCAAGAATAGTTAGAGAATTATTGTCTGCACCTCACTTTGAGCAGTTGTTACAGGACCCATTTGCCAACTATGTCATTCAATCTGCTCTTGCTGTAACTAAGGGTCCTCTCCATGGAACTTTGGTTGAAGCAGTTCGACCTCACAAAATCCTGCGCACCAGTCCATATTGCAAGAGGATTTTCTCGGGAAGTCTACTCAAGAAGTGA 1839 0.4562 MAVPMRKMTMSEDKRGTAEEAEARFVGIPNAPTQTPTPPPPPCLRVLHPDHVAVGSPITRVPLVPSSTSYSLPPSSTLTDPMWAHDLPNDFSRLNLFDGEIDSYPHHHHNTALFEKGFTFSSPDNLGNYMYHHILDQRRKHLQGTSGANANYQILRDRFVSPQSHGGVRTPVRFSPLNSTANNNPSHYYYAAKEKASIDSEQLSHVISPRRVVGDPSGYRCDNSIIIQGREAKQCFENGYSSTRGFRRSPRDEASIHGVGPKSFSAAAAAAASGQNQNNGDFTLPMLLDFYSVPDAQCYIYNLAKDQNGCRFLQRLVDEGTYQDMCMVFEGIIGSVVELMIDSFGNYLVQKLLDVCTDQQRLQIVFMLTNQPGQLVRISLNTHGTRVVQKLIETLNSAEQVSMVKSAIQPGFLDLIRDLNGNHVIQRCLQCLSCQDNQFIFDAAVKFCVEIATHRHGCCVMQRCIDYSVGKNRDKLVTEICKHGLLLSQDPFGNYVVQYVIEMDTPAASAKLLGLFKGNYVNLSTQKFSSHVVEKCLKHIGDTRSRIVRELLSAPHFEQLLQDPFANYVIQSALAVTKGPLHGTLVEAVRPHKILRTSPYCKRIFSGSLLKK 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01230 612 ProSiteProfiles Pumilio RNA-binding repeat profile. 550 587 IPR001313 GO:0003723
Cca03g01230 612 ProSiteProfiles Pumilio RNA-binding repeat profile. 479 514 IPR001313 GO:0003723
Cca03g01230 612 ProSiteProfiles Pumilio RNA-binding repeat profile. 295 330 IPR001313 GO:0003723
Cca03g01230 612 Pfam Pumilio-family RNA binding repeat 448 481 IPR001313 GO:0003723
Cca03g01230 612 Pfam Pumilio-family RNA binding repeat 486 508 IPR001313 GO:0003723
Cca03g01230 612 Pfam Pumilio-family RNA binding repeat 336 365 IPR001313 GO:0003723
Cca03g01230 612 Pfam Pumilio-family RNA binding repeat 556 574 IPR001313 GO:0003723
Cca03g01230 612 Pfam Pumilio-family RNA binding repeat 300 332 IPR001313 GO:0003723
Cca03g01230 612 Pfam Pumilio-family RNA binding repeat 412 442 IPR001313 GO:0003723
Cca03g01230 612 Pfam Pumilio-family RNA binding repeat 519 552 IPR001313 GO:0003723
Cca03g01230 612 Pfam Pumilio-family RNA binding repeat 374 403 IPR001313 GO:0003723
Cca03g01230 612 Gene3D - 289 609 IPR011989 -
Cca03g01230 612 CDD Pumilio 290 606 IPR033712 GO:0003723
Cca03g01230 612 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 117 612 - -
Cca03g01230 612 ProSiteProfiles Pumilio RNA-binding repeat profile. 331 367 IPR001313 GO:0003723
Cca03g01230 612 ProSiteProfiles Pumilio RNA-binding repeat profile. 370 405 IPR001313 GO:0003723
Cca03g01230 612 ProSiteProfiles Pumilio RNA-binding repeat profile. 443 478 IPR001313 GO:0003723
Cca03g01230 612 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 271 612 IPR033133 GO:0003723
Cca03g01230 612 SMART pum_5 295 330 IPR001313 GO:0003723
Cca03g01230 612 SMART pum_5 515 549 IPR001313 GO:0003723
Cca03g01230 612 SMART pum_5 331 366 IPR001313 GO:0003723
Cca03g01230 612 SMART pum_5 407 442 IPR001313 GO:0003723
Cca03g01230 612 SMART pum_5 370 405 IPR001313 GO:0003723
Cca03g01230 612 SMART pum_5 443 478 IPR001313 GO:0003723
Cca03g01230 612 SMART pum_5 552 587 IPR001313 GO:0003723
Cca03g01230 612 SMART pum_5 479 514 IPR001313 GO:0003723
Cca03g01230 612 ProSiteProfiles Pumilio RNA-binding repeat profile. 407 442 IPR001313 GO:0003723
Cca03g01230 612 SUPERFAMILY ARM repeat 297 605 IPR016024 -
Cca03g01230 612 PANTHER PUMILIO HOMOLOG 7, CHLOROPLASTIC-RELATED 117 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01230 Cca-Chr3 29239332 29243001 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01230 - - ccaj:109817322 1209.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01230 03 29239332 29243001 Cca03g01230 03 29239332 29243001 ECH
Cca05g01054 05 27292264 27297599 Cca03g01230 03 29239332 29243001 PCT