Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01052 ATGGATTCTGGCAACAGTGCAAGTATCTCCTCTAGTGGTGACGAAGAATACGATTCACGCCCTCACAACACACTACTCCCTTCAACCTTCCACCCTTCCCAATTCGCCTCCATCTCACACCCCTCTTTCTTTGATCTCTCCTCAACCGGCTACCTCCCCAACTCCTTCCTAAACCTCGACACCGCCACCTCATCATCCTCATCCCAACCTCGGAGATCCCAACCCGATTGCACCCTTAACGCTAACGTCACCTCACCACCCAACATGAACCAATGTTTGTTGCCTCCTCCAGCCGCCGATAATGCAAGACCGGTGCTATCCTCACCCCAGGCCAACACCAACGTTGCACGAAACTCCAAGAAGAGAACAAGAGCTTCCCGGAGAGCACCCACCACGGTTCTCACCACCGACACTTCCAATTTCCGAGCCATGGTTCAGGAGTTCACTGGAATCCCTTCACCACCTTTTTCTGCTTCTTCCTCTTACTCTCGCAGGCTCGATCTTCTCACTGCTTCAACAACGCCTCCTTTCTACCCTTTGCGTCCTTCACCACAAAAGGTAcaacatcatcatcatcatcatcaAAATCCATTGCTTTTATCTTCCTCATCGTCACCTTATAATAACATGGTTGATGCTATCGCTTCcaccaccaccaccatcaccaacaacaacaacaattcctcatccaataacaacagcaacaaccccattaactaccaacaacaactacCTCCTGATTTGGGTCTACCCTATCCTATGCTCAACATGCAAAACCAAAACCACCCTACTCTTGCATTTCACCCACCTCTTCACCCTTTTGGCCATCCAGGGTTTAATGCAAAGTTGCCATCCATTGAGGATCTGGGTATGAGCCATGCTCAAGTGAATAACAACAATACTGCAAATTTTGTTGCAAGTGGCGTTTCGCTGCCACTGAGGAGTGTTAACCACGGTGGAGGAGGAGGAGCAAGTGATGTTTCGTTAAGGTCCTTGGATGGTGGTGGTAGCTGCAAGTTGAATTTTTCTGCGGCTTCTGCGTCCACTAGCTTGAACCATGAGAAGAGCACCTTACAGAATAATAATAACAACAACGCTACTACTAGAGGGGAAGGTAACGTGGATTCCTGGATTTGTTCTTCTGATTAG 1149 0.443 MDSGNSASISSSGDEEYDSRPHNTLLPSTFHPSQFASISHPSFFDLSSTGYLPNSFLNLDTATSSSSSQPRRSQPDCTLNANVTSPPNMNQCLLPPPAADNARPVLSSPQANTNVARNSKKRTRASRRAPTTVLTTDTSNFRAMVQEFTGIPSPPFSASSSYSRRLDLLTASTTPPFYPLRPSPQKVQHHHHHHQNPLLLSSSSSPYNNMVDAIASTTTTITNNNNNSSSNNNSNNPINYQQQLPPDLGLPYPMLNMQNQNHPTLAFHPPLHPFGHPGFNAKLPSIEDLGMSHAQVNNNNTANFVASGVSLPLRSVNHGGGGGASDVSLRSLDGGGSCKLNFSAASASTSLNHEKSTLQNNNNNNATTRGEGNVDSWICSSD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01052 382 MobiDBLite consensus disorder prediction 349 382 - -
Cca05g01052 382 MobiDBLite consensus disorder prediction 220 243 - -
Cca05g01052 382 MobiDBLite consensus disorder prediction 105 119 - -
Cca05g01052 382 MobiDBLite consensus disorder prediction 61 132 - -
Cca05g01052 382 MobiDBLite consensus disorder prediction 220 245 - -
Cca05g01052 382 PANTHER VQ MOTIF-CONTAINING PROTEIN 1 380 IPR039609 -
Cca05g01052 382 MobiDBLite consensus disorder prediction 181 205 - -
Cca05g01052 382 MobiDBLite consensus disorder prediction 1 28 - -
Cca05g01052 382 MobiDBLite consensus disorder prediction 61 89 - -
Cca05g01052 382 PANTHER VQ MOTIF-CONTAINING PROTEIN 1 380 - -
Cca05g01052 382 Pfam VQ motif 128 155 IPR008889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01052 Cca-Chr5 27259761 27261292 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01052 - - ccaj:109809272 666.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01052 05 27259761 27261292 Cca05g01052 05 27259761 27261292 ECH
Cca05g01052 05 27259761 27261292 Cca03g01224 03 29120627 29122220 PCT