Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01044 ATGGGTCTCTCTTCCGTTGTCATCACCTTTCTCATCTCTTTCCTCTCTCTCACCGCCGAGTCAACTCAGCCTCCATATTCTTGCGACGCCTCCTTCCACCCACGCTACCCATTCTGCAACCCCGAGCTCCCCATAACTCAACGCGCCAAAGACCTTGTCTCGCGACTCACCCTCGACGAGAAACTCGCCCAACTCGTCAACACAGCACCCTCCATTCCGCGCCTCGGCATCCCCAGTTACCAGTGGTGGAGCGAAGCCCTGCACGGCGTCGCCGACGCCGGCCTCGGCATCAGACTCAACGGCACCATCAAAGGCGCCACCAGCTTCCCCCAGGTCATTCTCACGGCCGCCACCTTCGACCAAAACCTCTGGTACCAAATCGGCAAGGCTATTGGGACGGAAGCTCGAGCGGTGTACAATGCGGGACAAGCGACGGGGATGACGTTTTGGGCTCCGAACATAAACGTTTTCAGGGATCCACGGTGGGGGAGGGGGCAGGAGACGGCGGGGGAAGATCCTTTGATGAATGCAAAGTATGGTGTGGCGTATGTGAGAGGGCTTCAAGGGGATTCCTTTCATGGAGGCAAACTTGGAGAGAGGCTTCAAGCTTCAGCCTGCTGCAAGCACTTCACTGCTTACGATTTGGACCAATGGAAGGGCATCAATCGCTTTGTCTTCGATGCTCGTGTAACGTCGCAAGATTTGGCGGATACTTATCAGCCTCCATTTCAGAGTTGCATAGAGAAAGGTCGAGCAAGTGGGATAATGTGTGCCTACAACCGCGTCAATGGGGTTCCAAACTGTGCAGATTTCAATCTCTTAACCAAAACCGCAAGAAAACAATGGAAATTCGACGGGTATATTACTTCAGATTGTGGTGCAGTCTCTATCATACACGATGAGCAAGGTTATGCAAAAACAGCAGAGGACGCTATAGCCGATGTTTTTAGGGCAGGGATGGATGTGGAGTGTGGTGACTACATAAGCAAACATGGAAAATCAGCAGTGGTAAAAAAAAAATTGGGCATAGGTGAAATGGAGCGTGCCCTTGAGAACCTATTCTCCATGAGAATAAGGCTAGGCCTATTCGACGGAAACCCCACGAAGCTTCCATTCGGCAGCATCGGTCCCAGGCAAGTGTGTTCGAAAGAGCACCTTCACCTAGCTCTGGATGCAGCAAGAGACGGCATGGTGCTTCTAAAGAACACAAACTCACTCCTCCCACTTCCTAAAACAAACCCTACCCTCGCGCTCATAGGCCCCAATGCCAATGCCACGTCACTCGTTGCGTTGGGAAACTACTACGGTCGTCCTTGCAACTTGGTTACGCTCTTGCAAGCCTTCCAGGGGTACGCTAAGGACACCCGTTACCACCCTGGCTGTCACAATGGCACGCACTGTGACCGTGCCAGCATCCAGGATGCGTTGGACCTTGCTAAGAATGTCGATTATGTTGTGCTCGTTATGGGCCTGGATCAGAATCAGGAGAGGGAGTCCCATGATCGTCACTATTTGGGCCTGCCTGGGAAGCAGGAACAGTTGATCCACACAGTTGCCGCGGTTGCTAAGAGGCCCGTTGTTTTGGTGCTCTTGTCTGGGGGCCCAGTGGATATTACTTCGGCTAAGTTTGATCACAAAGTTGGAGGGATTTTATGGGCTGGCTACCCTGGGGAGCTTGGAGGCCTGGCCCTGGCCCAGGTTATCTTTGGTGATCATAACCCAGGAGGAAAACTACCAATAACATGGTACCCAAAAGACTACATCATCAAAGTACCCATGACAGATATGAGAATGAGAGCTGATCCAGCAACAGGGTACCCTGGAAGAACCTACCGATTCTACACTGGTCCAAAGGTTTACGAATTTGGCTATGGCCTAAGCTACACCAACTATTCCCACAACCTCATCTCTCTCTCTCAAACCACCCTCCACATCAACATATCATCGACCCATTATTACGTGACCGAAAATTCCGAAACCATACGTTACAAACTTGTTTCGGAGTTGGGGGAAGAAACATGCCGAAGCATGTCCTTGTCGGTGACCTTAGGAGTCACGAACCACGGTAGCATGTCGGGGAAGCATCCGGTGTTGCTGTTCACGAGGCAGGGGAAGGTGAGAAACGGGAATCCGGTGAAGCAATTGGTGGGTTTTGAGAGTGTGAAGGTGGATGCAGGGGAAACGGTTCAAGTGGGGTTTCAGCTAAGTCTTTGTGAGCATTTTAGTCGAGCCAATGAGGGTGGTTCTTTGGTGATTGAAGAAGGCTCTTATTCGTTGGTTGTGGAGGACCATGAGTATCCAATAAATATCACACTTTGA 2319 0.5144 MGLSSVVITFLISFLSLTAESTQPPYSCDASFHPRYPFCNPELPITQRAKDLVSRLTLDEKLAQLVNTAPSIPRLGIPSYQWWSEALHGVADAGLGIRLNGTIKGATSFPQVILTAATFDQNLWYQIGKAIGTEARAVYNAGQATGMTFWAPNINVFRDPRWGRGQETAGEDPLMNAKYGVAYVRGLQGDSFHGGKLGERLQASACCKHFTAYDLDQWKGINRFVFDARVTSQDLADTYQPPFQSCIEKGRASGIMCAYNRVNGVPNCADFNLLTKTARKQWKFDGYITSDCGAVSIIHDEQGYAKTAEDAIADVFRAGMDVECGDYISKHGKSAVVKKKLGIGEMERALENLFSMRIRLGLFDGNPTKLPFGSIGPRQVCSKEHLHLALDAARDGMVLLKNTNSLLPLPKTNPTLALIGPNANATSLVALGNYYGRPCNLVTLLQAFQGYAKDTRYHPGCHNGTHCDRASIQDALDLAKNVDYVVLVMGLDQNQERESHDRHYLGLPGKQEQLIHTVAAVAKRPVVLVLLSGGPVDITSAKFDHKVGGILWAGYPGELGGLALAQVIFGDHNPGGKLPITWYPKDYIIKVPMTDMRMRADPATGYPGRTYRFYTGPKVYEFGYGLSYTNYSHNLISLSQTTLHINISSTHYYVTENSETIRYKLVSELGEETCRSMSLSVTLGVTNHGSMSGKHPVLLFTRQGKVRNGNPVKQLVGFESVKVDAGETVQVGFQLSLCEHFSRANEGGSLVIEEGSYSLVVEDHEYPINITL 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01044 772 SMART Fn3_like_2 695 765 IPR026891 -
Cca05g01044 772 Pfam Fibronectin type III-like domain 697 763 IPR026891 -
Cca05g01044 772 PANTHER SUGAR HYDROLASE-RELATED 7 771 IPR044993 GO:0009044|GO:0045493
Cca05g01044 772 Gene3D - 382 629 IPR036881 GO:0004553|GO:0005975
Cca05g01044 772 PANTHER GLYCOSIDE HYDROLASE FAMILY 3 PROTEIN 7 771 - -
Cca05g01044 772 Pfam Glycosyl hydrolase family 3 N terminal domain 102 323 IPR001764 GO:0004553|GO:0005975
Cca05g01044 772 Pfam Glycosyl hydrolase family 3 C-terminal domain 397 628 IPR002772 GO:0004553|GO:0005975
Cca05g01044 772 PRINTS Glycosyl hydrolase family 3 signature 109 128 IPR001764 GO:0004553|GO:0005975
Cca05g01044 772 PRINTS Glycosyl hydrolase family 3 signature 203 219 IPR001764 GO:0004553|GO:0005975
Cca05g01044 772 PRINTS Glycosyl hydrolase family 3 signature 277 295 IPR001764 GO:0004553|GO:0005975
Cca05g01044 772 SUPERFAMILY (Trans)glycosidases 36 396 IPR017853 -
Cca05g01044 772 Gene3D Immunoglobulins 659 771 IPR013783 -
Cca05g01044 772 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 397 631 IPR036881 GO:0004553|GO:0005975
Cca05g01044 772 Gene3D - 48 370 IPR036962 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01044 Cca-Chr5 27101995 27105819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01044 14 772 Glycoside Hydrolase AT1G78060 61.619 0.0 967
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01044 - - gmx:100780688 1311.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01044 05 27101995 27105819 Cca05g01044 05 27101995 27105819 ECH
Cca05g01044 05 27101995 27105819 Cca03g01216 03 28902811 28915617 PCT