Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01216 ATGGGTGTCCCAGTCCCAGCAGCCTTGAGCTTTGCGATTGCGAGCATCTTTTGGGTGACAGTCGTCCTCCATGTCACTGCAGAGCCTCCTTTCGCATGCGACTGGTCCAACCCTTCCTCCAGATCCTACCCCTTCTGCAACCCCAAGCTCCCCATTCCCCAACGAACCAACGACCTCCTCTCCCGACTCACCCTCGCCGAGAAACTCTCTCAGCTCGTCAACAccgcccctcccatcccccgcctcgccatccccgccTACCAGTGGTGGAGCGAGGCCCTCCACGGCGTCGGAAGCGTGGGCCGCGGCGTCCGCTTCAACGGCACCGTCACCTCCGCCACGAGCTTCCCCCAGGTGATCCTCACCGCAGCCTCCTTCGACTCCCGCCTCTGGTACGAAATCGGTGACGCCATCGGCGTGGAAGCGAGGGGCATCTACAATGCGGGGCAGAGCATGGGCCTGACCTTTTGGGCCCCCAACATTAACCTCTTTAGGGATCCAAGATGGGGCAGGGGCCAGGAGACAGCCGGCGAAGACCCTCTCCTCACCTCTCGCTACGCCGTCTCCTACGTCCGAGGCCTCCAAGGAGATTCCTTCCAAGGAGGCAAACTGCGAGGCCACCTCCAAGCCTCCGCCTGCTGCAAGCATTTCACCGCTTATGATTTGGATAATTGGAAAGGCGTGGATCGCTTTCGCTTCGATGCTCGCGTATCTTTGCAAGACCTGGCGGATACATATCAGCCTCCGTTTGAGAGTTGCGTGCAGCAAGGGCGGGCCAGTGGGATAATGTGCGCTTACAACCGCGTGAACGGGGTTCCCAACTGTGCGGATTTCGATCTCTTGACTAAAACCGCTAGAAAACAGTGGGATTTCCATGGCTACATTACGTCGGATTGTGGTGCAGTGGGGATCATTCATGACCAGCAAGGCTATGCAAAATCAGCAGAGGATGCTGTTGCTGATGTGCTTCGAGCTGGGATGGATGTGGAATGTGGTTCTTATTTGACGGATCATGCTAAATCAGCAGTGTTGCAGAAAAAGTTAGCCATGTCTGAAATAGACCGTGCCCTTCACAATCTGTTTTCTATTAGAATGAGGCTAGGCCTGTTTGATGGAAATCCAACAAGGCTACCATTTGGGATGATTGGCCCGAATCATGTGTGTTCCAAAGATCACCAATATCTGGCTCTTGAAGCTGCAAGAAATGGCATTGTTCTCTTAAAAAACACTGCAGCACTTCTCCCACTTCCCAAAACAAGCCCCAGCATTTCCTTAGCAGTGATAGGTCCCAATGCCAATGCTTCTCCGCTGACTCTTCTTGGAAACTATGCTGGCCCTCCTTGTAACTACGTCACAATATTGCAAGGGTTTCAGCACTATGCCAAGAACGCCGTTTATCATCCTGGCTGTGATGGTGGACCAAAGTGTTCTTCGGCTCAAATAGAGCAGGCAGTGGAAGTTGCCAAAAAAGTTGATTATGTGGTGCTGGTTATGGGATTGGATCAAAGTGAAGAGAGGGAAGAACGTGATCGCATTCACCTAGACTTGCCAGGAAAGCAACTGGAACTCATCAACAGCGTTGCCGAAGCTTCTAAGAAACCAGTTATTCTGGTGCTCCTTTGTGGAGGGCCTGTAGATATCAGTTCAGCCAAGTATAACCACAAAATTGGAGGCATCCTCTGGGCTGGTTATCCAGGGGAACTTGGAGGCATTGCACTTGCACAGATTATCTTTGGTGACCATAATCCAGGAGGAAGACTACCAATTACTTGGTACCCAAAAGATTACATCAAAGTACCAATGACAGACATGAGGATGCGAGCAGATCCTTCAACTGGCTATCCCGGGAGGACTTACCGATTTTACAAGGGTCCAAAGGTGTATGAATTTGGCTATGGCCTAAGCTACTCAAAGTATTCCTACGAGTTCGTTTCTGTTACACACAACAAGCTTCACTTGAACCAATCATCCACTTATTTGATGGTTGAAAATTCAGAAACCATAAGGTACAAACTAATTTCGGAGTTGGGTGAAGAAACCTGCCAAAGCATGTCGGTCTCAGTGAGCGTGAAAGTTCAAAATCATGGAAGCAGGGTGGGGAAACATCCCGTATTGCTATTTATGAGACCTGGAAAACAGAGTAGTGGAAGTCCTGTGAAACAGTTGGTAGGTTTCCAGAGTGTGATGCTTGATGCAGGGGAAATGACTCATGTTGGATTTGTGGTAAGCCCTTGTGAACATCTTAGTAGAGCGAATGAGGCTGGTGCAAAGATAATAGAAGAAGGGTCTCATGTGTTGCTTGTGGATGATCAAGAACACCCTATAGATATATTTGTTTGA 2340 0.4923 MGVPVPAALSFAIASIFWVTVVLHVTAEPPFACDWSNPSSRSYPFCNPKLPIPQRTNDLLSRLTLAEKLSQLVNTAPPIPRLAIPAYQWWSEALHGVGSVGRGVRFNGTVTSATSFPQVILTAASFDSRLWYEIGDAIGVEARGIYNAGQSMGLTFWAPNINLFRDPRWGRGQETAGEDPLLTSRYAVSYVRGLQGDSFQGGKLRGHLQASACCKHFTAYDLDNWKGVDRFRFDARVSLQDLADTYQPPFESCVQQGRASGIMCAYNRVNGVPNCADFDLLTKTARKQWDFHGYITSDCGAVGIIHDQQGYAKSAEDAVADVLRAGMDVECGSYLTDHAKSAVLQKKLAMSEIDRALHNLFSIRMRLGLFDGNPTRLPFGMIGPNHVCSKDHQYLALEAARNGIVLLKNTAALLPLPKTSPSISLAVIGPNANASPLTLLGNYAGPPCNYVTILQGFQHYAKNAVYHPGCDGGPKCSSAQIEQAVEVAKKVDYVVLVMGLDQSEEREERDRIHLDLPGKQLELINSVAEASKKPVILVLLCGGPVDISSAKYNHKIGGILWAGYPGELGGIALAQIIFGDHNPGGRLPITWYPKDYIKVPMTDMRMRADPSTGYPGRTYRFYKGPKVYEFGYGLSYSKYSYEFVSVTHNKLHLNQSSTYLMVENSETIRYKLISELGEETCQSMSVSVSVKVQNHGSRVGKHPVLLFMRPGKQSSGSPVKQLVGFQSVMLDAGEMTHVGFVVSPCEHLSRANEAGAKIIEEGSHVLLVDDQEHPIDIFV 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01216 779 PANTHER GLYCOSIDE HYDROLASE FAMILY 3 PROTEIN 9 777 - -
Cca03g01216 779 Gene3D - 55 376 IPR036962 GO:0004553|GO:0005975
Cca03g01216 779 PRINTS Glycosyl hydrolase family 3 signature 116 135 IPR001764 GO:0004553|GO:0005975
Cca03g01216 779 PRINTS Glycosyl hydrolase family 3 signature 284 302 IPR001764 GO:0004553|GO:0005975
Cca03g01216 779 PRINTS Glycosyl hydrolase family 3 signature 210 226 IPR001764 GO:0004553|GO:0005975
Cca03g01216 779 PANTHER SUGAR HYDROLASE-RELATED 9 777 IPR044993 GO:0009044|GO:0045493
Cca03g01216 779 SUPERFAMILY (Trans)glycosidases 43 402 IPR017853 -
Cca03g01216 779 Pfam Glycosyl hydrolase family 3 C-terminal domain 404 636 IPR002772 GO:0004553|GO:0005975
Cca03g01216 779 SMART Fn3_like_2 702 772 IPR026891 -
Cca03g01216 779 Pfam Glycosyl hydrolase family 3 N terminal domain 110 360 IPR001764 GO:0004553|GO:0005975
Cca03g01216 779 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 404 639 IPR036881 GO:0004553|GO:0005975
Cca03g01216 779 Gene3D - 389 637 IPR036881 GO:0004553|GO:0005975
Cca03g01216 779 Gene3D Immunoglobulins 664 778 IPR013783 -
Cca03g01216 779 Pfam Fibronectin type III-like domain 704 770 IPR026891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01216 Cca-Chr3 28902811 28915617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g01216 26 779 Glycoside Hydrolase AT1G78060 65.125 0.0 1018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01216 - - aprc:113867121 1395.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01216 03 28902811 28915617 Cca03g01216 03 28902811 28915617 ECH
Cca05g01044 05 27101995 27105819 Cca03g01216 03 28902811 28915617 PCT