Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01043 ATGAGTGTGGATCCAAAGAAAACCACCTCTAACGGCCAGGATAAAATGTTAACATCACAAGAACAGCAAGCATTGATCATTGAGGTGAGAAGGTTGGTTGGGCCACAATCTGGTAAGGCATCCATTTTTTGTTCCGATGCTTGCATCTCAAGGTATTTGAGGGCACGAAATTGGAATGTCAAGAAGGCAGCCAAAATGTTGAAGCTGACCCTGAAATGGAGACAAGAATACAAACCAGAAGAGATCCGCTGGGAAGATGTTGCTCAGGAAGCAGAGACAGGAAAAATCTATAGAACAAATTACATTGACAAGCGTGGGAGAACAGTCCTAGTAATGAGACCTAGTCGCCAGAACTCAAAATCAACAAAAGGACAAATTAAATATTTGGTATATTGCATGGAGAATGCTATTTTAAATCTTCCACCAGAACAGGAACAGATGGTCTGGCTGATTGACTTCCAGGGTTTCAATATGTCTCATATATCAATAAAGGTGACACGTGAAACTGCTCATGTATTACAAGAACATTATCCTGAACGGTTGGGTCTAGCAATACTGTACAATGCACCAAAGTTCTTTGAACCATTTTTCACGATGGTAAAGCCCATATTAGAGCCCAAGACTTATAACAAAGTCAAATTCGGTTACTCTGATGATCAGAACACCAAGAAGATTATGGAGGATTTGTTTGATTTTGATCATCTTGAATCTGCATTTGGTGGGAAAGATGATTCAGGATTTGACATAAATAAATATGCTGAGAGAATGAGAGAGGATGACAAGAAGATTCCCTCTTTCTGGACAAGGGAAAATTCTCCATCATCAGTCCCAAATAATGCTCCTCCTTCTTTAGATTCAATTAGGTTAGACTCAGATACTGATGCTTCTGACAATGAGAAAATAGAATCTTCCCCTGACCCTGTGATGGGCACAGATATCGTTAACCCTGATCAGAAAATCTTGGTTAGTGAAGCAGAAAGAAAGGGCAGTGCAGATGTGCATTAG 1005 0.4 MSVDPKKTTSNGQDKMLTSQEQQALIIEVRRLVGPQSGKASIFCSDACISRYLRARNWNVKKAAKMLKLTLKWRQEYKPEEIRWEDVAQEAETGKIYRTNYIDKRGRTVLVMRPSRQNSKSTKGQIKYLVYCMENAILNLPPEQEQMVWLIDFQGFNMSHISIKVTRETAHVLQEHYPERLGLAILYNAPKFFEPFFTMVKPILEPKTYNKVKFGYSDDQNTKKIMEDLFDFDHLESAFGGKDDSGFDINKYAERMREDDKKIPSFWTRENSPSSVPNNAPPSLDSIRLDSDTDASDNEKIESSPDPVMGTDIVNPDQKILVSEAERKGSADVH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01043 334 SUPERFAMILY CRAL/TRIO N-terminal domain 18 86 IPR036273 -
Cca05g01043 334 MobiDBLite consensus disorder prediction 263 317 - -
Cca05g01043 334 Pfam CRAL/TRIO, N-terminal domain 45 68 IPR011074 -
Cca05g01043 334 CDD SEC14 92 242 IPR001251 -
Cca05g01043 334 SMART sec14_4 90 244 IPR001251 -
Cca05g01043 334 Gene3D - 2 271 IPR036865 -
Cca05g01043 334 MobiDBLite consensus disorder prediction 267 286 - -
Cca05g01043 334 SUPERFAMILY CRAL/TRIO domain 84 262 IPR036865 -
Cca05g01043 334 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Cca05g01043 334 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Cca05g01043 334 PANTHER GH16843P 1 304 - -
Cca05g01043 334 Pfam CRAL/TRIO domain 92 241 IPR001251 -
Cca05g01043 334 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01043 Cca-Chr5 27073013 27078483 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01043 - - gmx:100780151 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01043 05 27073013 27078483 Cca05g01043 05 27073013 27078483 ECH
Cca05g01043 05 27073013 27078483 Cca03g01215 03 28880097 28884057 PCT