Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01215 ATGTCTCTTTTACTGAACAGTATGAGTCAGGATCTGAAGAAAACTGCCTCTAACGGTCACGAGAAAATGCTAATATCACAAGAACAGCATGCAAAGATCAATGAGGTGAGAAGTTTGATAGGCCCGTTATCAGATAAGGCATCTGTGTACTGTTCTGATGCATCCATCTCAAGGTATTTAAGGTCACGAAATTGGAATGTCAAGAAGGCAACTAAAATGTTGAAACAAAGCCTAAAATGGAGAAAAGAATACAAACCTGAAGAGATCCGCTGGGAAGAGGTTGCTGAGGAAGCAGAGACAGGAATTATGTATAGACCAAATTATCATGACAAGTATGGGAGATCCGTGCTTGTAATGAGACCTTGTTGCCAGAACTCAAAATCAACACAGGTACAGGTTAAGTATTTTGTATACGTCATGGAGAGTGCCATTTTAAATCTTCCACCACACCAGGAACAGGTGGTCTGGATGGTAGATTTCAAGGGTTTCAAGTTGTCAGATATATCATTCAAGGTGACACGTGAAATTGCCCATTTATTGCAAGAGTATTATCCAGAGAGGCTGGGTTTGGCAATAATGTACAATGCGCCAATGATCTTTCAATCATTCCTCTCGATGGTAAAGCCCTTTGTAGAGGCTGAGACTTTCAATAAAGTGAAGTTTGTCTATTCCAATGACCACAACACACAGAAGATTATGGAGGATTTGTTTGATATGAATAATCTTGAATCTGCATTTGGTGGGAATGGTGTCACTGTCACAGGAGATGACATAAATAAATTTGCTGAGAGAATGAAAGAGGAAGACAATAAGAAACATTCTTTCTGGACACAGACCAAGTCTCTACCATCAGTTGCACATAATGCTCCTTTAGATTCGGTCAGGTTAGATGCAGATTCTGATGCTTCTAACAATGAGAAAAAGGACTGTTCCCCTGTTCCTATCAAACCCTGA 954 0.3994 MSLLLNSMSQDLKKTASNGHEKMLISQEQHAKINEVRSLIGPLSDKASVYCSDASISRYLRSRNWNVKKATKMLKQSLKWRKEYKPEEIRWEEVAEEAETGIMYRPNYHDKYGRSVLVMRPCCQNSKSTQVQVKYFVYVMESAILNLPPHQEQVVWMVDFKGFKLSDISFKVTREIAHLLQEYYPERLGLAIMYNAPMIFQSFLSMVKPFVEAETFNKVKFVYSNDHNTQKIMEDLFDMNNLESAFGGNGVTVTGDDINKFAERMKEEDNKKHSFWTQTKSLPSVAHNAPLDSVRLDADSDASNNEKKDCSPVPIKP 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01215 317 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 90 254 IPR001251 -
Cca03g01215 317 CDD SEC14 99 249 IPR001251 -
Cca03g01215 317 Gene3D - 4 286 IPR036865 -
Cca03g01215 317 Pfam CRAL/TRIO domain 100 248 IPR001251 -
Cca03g01215 317 SMART CRAL_TRIO_N_2 52 77 IPR011074 -
Cca03g01215 317 SUPERFAMILY CRAL/TRIO N-terminal domain 26 93 IPR036273 -
Cca03g01215 317 MobiDBLite consensus disorder prediction 286 317 - -
Cca03g01215 317 SUPERFAMILY CRAL/TRIO domain 91 256 IPR036865 -
Cca03g01215 317 Pfam CRAL/TRIO, N-terminal domain 32 75 IPR011074 -
Cca03g01215 317 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 8 313 - -
Cca03g01215 317 PANTHER GH16843P 8 313 - -
Cca03g01215 317 SMART sec14_4 97 251 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01215 Cca-Chr3 28880097 28884057 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01215 - - gmx:100777065 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01215 03 28880097 28884057 Cca03g01215 03 28880097 28884057 ECH
Cca05g01043 05 27073013 27078483 Cca03g01215 03 28880097 28884057 PCT