Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01042 ATGGCTGCTGTAGGAGTTTATAACCAAGCAATTGGGGTTTTTCAATCCCATTCTCGTGTCAACGATTTTAACCATCAGCAGAAGTTTAACAATTTTGTAAGACTGGTGACAAAGGATTTTATCAGCAGTAATTGCTTGTCAAGAAGGGATTGTAGTGTCATTAGATCTTCAGCGTCTCAAACATCAGTGGTTGACACGGTATCATCCCCTTCCAGAAGCAAAACTAGTGATAAAGACACTCACAAGAAATCAAATGAAGCTTCTTTGATCCTTATTCGACACGGTGAGTCCTTGTGGAATGAAAAGAACTTGTTCACAGGTTGTGTTGATGTCCCTCTAAGCAAGAAGGGTATAGATGAGGCAATTGAAGCTGGCAAAAGAATTAGCAGTATTCCTGTGGATCTCATATTTACATCTGCTTTGATTCGTGCGCAAATGACAGCCATGCTTGCCATGACACAGCACCGCCGCAGGAAGGTGCCTATCATAATGCACAATGAGAGTGAACAAGCAAGGGAATGGAGTCAAGTTTTTAGTGAAGATACAAAAAAGCAATCGATGCCAGTCATAGCAGCTTGGCAATTGAATGAAAGAATGTACGGGGAACTACAGGGACTCAATAAGCAAGAAACAGCAGACAGATATGGGAAAGAACAAGTACATGAGTGGCGTAGAAGTTATGACACACCTCCCCCAAATGGTGAAAGTTTGGAAATGTGTGCTGAAAGAGCAGTTGCCTATTTTAGAGACCAAATTGAACCTCAACTTTTATCCGGAAAGAATATTATGATTGCAGCCCATGGAAATTCCCTGAGATCCATTATTATGTATCTTGACAAACTAACTTCCCAAGAGGTGATTAGTTTAGAATTGTCAACTGGAATTCCAATGCTTTATATTTTCAAAGAAGGAAGATTCATTAGAAGGGGGAGTCCAATAGGACCAACTGAAGCTGGAGTTTATGCCTACACTAGGCGTTTGGCTCTTTACAGGCAGAGGTTGGATGATATGTTCTAA 1017 0.4081 MAAVGVYNQAIGVFQSHSRVNDFNHQQKFNNFVRLVTKDFISSNCLSRRDCSVIRSSASQTSVVDTVSSPSRSKTSDKDTHKKSNEASLILIRHGESLWNEKNLFTGCVDVPLSKKGIDEAIEAGKRISSIPVDLIFTSALIRAQMTAMLAMTQHRRRKVPIIMHNESEQAREWSQVFSEDTKKQSMPVIAAWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDTPPPNGESLEMCAERAVAYFRDQIEPQLLSGKNIMIAAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGRFIRRGSPIGPTEAGVYAYTRRLALYRQRLDDMF 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01042 338 SMART PGAM_5 88 274 IPR013078 -
Cca05g01042 338 Pfam Histidine phosphatase superfamily (branch 1) 89 162 IPR013078 -
Cca05g01042 338 Pfam Histidine phosphatase superfamily (branch 1) 184 292 IPR013078 -
Cca05g01042 338 PANTHER PHOSPHOGLYCERATE MUTASE 1, HISTIDINE PHOSPHATASE SUPERFAMILY-RELATED 7 337 - -
Cca05g01042 338 SUPERFAMILY Phosphoglycerate mutase-like 89 305 IPR029033 -
Cca05g01042 338 CDD HP_PGM_like 89 308 IPR013078 -
Cca05g01042 338 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 91 100 IPR001345 GO:0003824
Cca05g01042 338 MobiDBLite consensus disorder prediction 64 83 - -
Cca05g01042 338 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 86 313 IPR005952 GO:0004619|GO:0006096|GO:0016868
Cca05g01042 338 Gene3D - 78 310 IPR029033 -
Cca05g01042 338 PANTHER PHOSPHOGLYCERATE MUTASE 7 337 IPR005952 GO:0004619|GO:0006096|GO:0016868
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01042 Cca-Chr5 27054352 27057707 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01042 K01834 - gmx:100784422 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01042 05 27054352 27057707 Cca05g01042 05 27054352 27057707 ECH
Cca05g01042 05 27054352 27057707 Cca03g01214 03 28875814 28879905 PCT