Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01214 ATGGCTGCTGAAGCATATTACCAGGCTATTGGCACTTTGCAATCCCATTCTTATTTGAATAATTTTAATCATCATCAAAAACTTCAGAACAATTATGTAAGATTGGTGACAAAGGATTCCGTCAGTAGTAATGGCTTGTCGAGGAGAAGTAGCTCTGGCCAGAGGAATTGTGGTGCAATTCTAGCTTCACAAACAGCAGTGGTTGATCCAGTGTTGTCCCCTTCAAGAAGCAACGCTGGTGACACTCACAAGAAATCAAATGAAGCAGCCTTAATTCTTATTCGGCATGGTGAGTCATCGTGGAATGAAAAGAACTTATTCACAGGTTGTGTTGATGTTCCACTAAGCAAGAAGGGTATAGATGAGGCAATTGAAGCTGGAAAAAGAATTAGCAGCATTCCTGTTGATGTCATATTTACATCAGCCTTGATTCGTGCACAAATGACAGCCATGCTTGCCATGACCCAGCACCGTCGAGGGAAGGTCCCTGTCATTATGCATAATGAAAGTGAACAAGCAAGGTCATGGAGTCAAGTGTATAGTGAAGATACAAAAAAGCAGTCCATTCCGGTCATAGCATCTTGGCAACTAAATGAAAGAATGTATGGGGAACTGCAGGGTCTCAATAAGCAAGAAACAGCAGACAGATATGGGAAAGAACAAGTCCATGAGTGGCGACGAAGTTATGACATACCTCCTCCAAACGGTGAAAGTTTGGAAATGTGTGCTCAAAGAGCAGTTGCCTATTTCAGAGACCAAATTGAACCTCAACTTTTATCTGGAAAGAATGTCATGATTTCAGCCCATGGGAATTCATTGAGATCCATTATCATGTACCTTGATAAATTAACTTCACAAGAGGTCATTAGTTTGGAGCTTTCAACTGGAATTCCCATGCTTTACATTTTCAAAGAGGGCAGATTCATTAGGAGGGGGAGTCCCATAGGACCTTCCGAAGCTGGAGTTTATGCCTATACTAGGCGTTTGGCTCTTTACAGGCAGAAGTTGGATGAGAAGTTCCAATGA 1026 0.4191 MAAEAYYQAIGTLQSHSYLNNFNHHQKLQNNYVRLVTKDSVSSNGLSRRSSSGQRNCGAILASQTAVVDPVLSPSRSNAGDTHKKSNEAALILIRHGESSWNEKNLFTGCVDVPLSKKGIDEAIEAGKRISSIPVDVIFTSALIRAQMTAMLAMTQHRRGKVPVIMHNESEQARSWSQVYSEDTKKQSIPVIASWQLNERMYGELQGLNKQETADRYGKEQVHEWRRSYDIPPPNGESLEMCAQRAVAYFRDQIEPQLLSGKNVMISAHGNSLRSIIMYLDKLTSQEVISLELSTGIPMLYIFKEGRFIRRGSPIGPSEAGVYAYTRRLALYRQKLDEKFQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01214 341 PANTHER PHOSPHOGLYCERATE MUTASE 1, HISTIDINE PHOSPHATASE SUPERFAMILY-RELATED 1 339 - -
Cca03g01214 341 SUPERFAMILY Phosphoglycerate mutase-like 91 307 IPR029033 -
Cca03g01214 341 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 93 102 IPR001345 GO:0003824
Cca03g01214 341 Hamap 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase [gpmA]. 88 315 IPR005952 GO:0004619|GO:0006096|GO:0016868
Cca03g01214 341 SMART PGAM_5 90 276 IPR013078 -
Cca03g01214 341 CDD HP_PGM_like 91 310 IPR013078 -
Cca03g01214 341 PANTHER PHOSPHOGLYCERATE MUTASE 1 339 IPR005952 GO:0004619|GO:0006096|GO:0016868
Cca03g01214 341 Pfam Histidine phosphatase superfamily (branch 1) 186 294 IPR013078 -
Cca03g01214 341 Pfam Histidine phosphatase superfamily (branch 1) 91 165 IPR013078 -
Cca03g01214 341 Gene3D - 80 312 IPR029033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01214 Cca-Chr3 28875814 28879905 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01214 K01834 - gmx:100802621 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01214 03 28875814 28879905 Cca03g01214 03 28875814 28879905 ECH
Cca05g01042 05 27054352 27057707 Cca03g01214 03 28875814 28879905 PCT