Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01041 ATGGGAGTGAGAATAGCCTTTGTGGTATTTGTGTGTGTTCTTCCAACGATGGTATCAGCCATACGCCCTCACTTGGCCCCTTTCTATGTGAAAGGTCGTGTGTATTGTGACCCTTGTCGTGCTGGTTTTGAGACCCCTGCCACCACCTACATTGCTGGTGCCGAGGTTACACTGCAATGCAACGACAGAATGACAAACAACATTGTGTACAGCAAGAAGGGTAGGACCGATTCCACAGGATCATACACAATCTTTGTGGACGCAAATCAAGCGAATCAAAATTGTGATGCCAGGCTTGTAACCAGTCCTCTTCCTGATTGCAAAGAACCCACTCCAGGTCGTGACCACTCACGTGTCATTCTCAATCGATTCAATGGCATTGCCACCAGAGATAGATTTGTTAATAACTTGGGTTTCATGAAGGAAACGGTCGCATCTAGTTGTGCAAAGATTTTCAGGCGTTACCGAGAGGCTGATAATGAGAATTAA 489 0.4601 MGVRIAFVVFVCVLPTMVSAIRPHLAPFYVKGRVYCDPCRAGFETPATTYIAGAEVTLQCNDRMTNNIVYSKKGRTDSTGSYTIFVDANQANQNCDARLVTSPLPDCKEPTPGRDHSRVILNRFNGIATRDRFVNNLGFMKETVASSCAKIFRRYREADNEN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01041 162 PANTHER ALLERGEN-LIKE PROTEIN BRSN20 4 161 - -
Cca05g01041 162 Pfam Pollen protein Ole e 1 like 30 112 - -
Cca05g01041 162 PANTHER PROTEIN DOWNSTREAM OF FLC-RELATED 4 161 IPR006041 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01041 Cca-Chr5 27029922 27031034 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01041 - - gmx:100796594 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01041 05 27029922 27031034 Cca05g01041 05 27029922 27031034 ECH
Cca05g01041 05 27029922 27031034 Cca03g01213 03 28867962 28869647 PCT