Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01213 ATGGCATCGAGAGTAGTGTTATTGTTGGCTATGTGTGTGCTGCCGGCGATGGTTGTGGCCATTCGCCCTGCCAAGAACCCCTTTAGCGTCAAGGGTCGCGTCTACTGTGACCCTTGCCGTGCTGGTTTTGAGACCCCTGCAACCACCTACATTGCTGGTGCGGAGGTTATGTTGCAATGCAAGAGCAGGGTTAGCAACGAGGTTGTGTACACAAAGAAGGGGTGGACCGACTCAACAGGAACATACACAATAAATGTGGATGAGGATCACGCAGATCAAGTCTGCAATGCCAAGCTTGTAAGCAGCCCTCACCCACAATGCAAGCACGCCACCCCAGGCCGTGATGAAGCCCTTGTTATTCTCACCCGCTACAATGGCATTGCCACAGATAATAGGTTTGCCAATGCCATGGGCTTCATGTCACAGGATGTTGCATCTGGCTGTGCTGAGATCCTCAAGCAATACCAGGAGTTCGACAATGAGAATTAA 489 0.5133 MASRVVLLLAMCVLPAMVVAIRPAKNPFSVKGRVYCDPCRAGFETPATTYIAGAEVMLQCKSRVSNEVVYTKKGWTDSTGTYTINVDEDHADQVCNAKLVSSPHPQCKHATPGRDEALVILTRYNGIATDNRFANAMGFMSQDVASGCAEILKQYQEFDNEN 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01213 162 Pfam Pollen protein Ole e 1 like 30 111 - -
Cca03g01213 162 PANTHER ALLERGEN-LIKE PROTEIN BRSN20 2 161 - -
Cca03g01213 162 PANTHER PROTEIN DOWNSTREAM OF FLC-RELATED 2 161 IPR006041 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01213 Cca-Chr3 28867962 28869647 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01213 - - gmx:100305566 303.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01213 03 28867962 28869647 Cca03g01213 03 28867962 28869647 ECH
Cca05g01041 05 27029922 27031034 Cca03g01213 03 28867962 28869647 PCT