Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01036 ATGCTTCTCGGGAAAAGACCTCGTCCTCCAATGAAGAGAACCACCAGCATGTCCGAAATAACGTTGGATCTGAACACCGCTGCCTCCGATGCTGTTGACCAACAGAGATCAGGTGCTGTTACTTCCTCGGGAACATCCAAATTGCTCCGCAGACATTCCTCCGATTTCGTAGACTCAACACCTCACTTTCTCCGCGCTTGCTCTCTCTGCAAACGCCCTCTCGTTCCCGGTCGCGACATCTACATGTACAGGGGTGATAGTGCTTTCTGCAGCCTGGAGTGTCGCCAGCAGCAGATGAACCAGGACGAGAGAAAAGAGAAGTTTATTATGGCGTCGAAGAAGCAATCCATGGCTCCTCCACCATCTGGGTCTAAAGTCACCGCCACCAAGGGAGAAACCACCGTGGTTGCGTTGTAG 417 0.5252 MLLGKRPRPPMKRTTSMSEITLDLNTAASDAVDQQRSGAVTSSGTSKLLRRHSSDFVDSTPHFLRACSLCKRPLVPGRDIYMYRGDSAFCSLECRQQQMNQDERKEKFIMASKKQSMAPPPSGSKVTATKGETTVVAL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01036 138 MobiDBLite consensus disorder prediction 117 131 - -
Cca05g01036 138 MobiDBLite consensus disorder prediction 113 132 - -
Cca05g01036 138 Pfam zinc-finger of the FCS-type, C2-C2 57 105 IPR007650 -
Cca05g01036 138 MobiDBLite consensus disorder prediction 28 50 - -
Cca05g01036 138 PANTHER - 1 34 - -
Cca05g01036 138 PANTHER - 48 137 - -
Cca05g01036 138 MobiDBLite consensus disorder prediction 28 52 - -
Cca05g01036 138 ProSiteProfiles Zinc finger FLZ-type profile. 62 106 IPR007650 -
Cca05g01036 138 PANTHER FCS-LIKE ZINC FINGER 5 48 137 - -
Cca05g01036 138 PANTHER FCS-LIKE ZINC FINGER 5 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01036 Cca-Chr5 26985869 26987017 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01036 - - gmx:100527853 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01036 05 26985869 26987017 Cca05g01036 05 26985869 26987017 ECH
Cca05g01036 05 26985869 26987017 Cca03g01211 03 28853372 28854321 PCT