Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01211 ATGATGCTAGGGAAGAGACCTCCTCCTCCTCAAGTCAAGAGAACCACCAGCATGTCAGACATAACCTTCGATCTCAACAACCCCGCCGTGGGAGCAGATGGCCCAGGCCCAAGCCCAGGCCCATGGTCGCAACACCCTCCTGATGGTTTAGACCAGAGCAGGGTTTGGGCCACGGTTTCACCTAGAAAGCAGAGAGATTTGGCGCACACACACCCGCCTGACTTCTTGCGGGCTTGCTTTCTCTGCAAAGGGCGTTTGGTAGCGGGCCGTGACATCTACATGTACAGAGGTGATAGTGCTTTCTGTAGCTCAGAATGCCGTGAGAAGCAGATGAAGCAGGACGAGAGAAAGGAAAAGTGTGGTGTGGGTGTGCCATCCAAACCCCAAACCCTACTTGCCTTGTAG 405 0.5457 MMLGKRPPPPQVKRTTSMSDITFDLNNPAVGADGPGPSPGPWSQHPPDGLDQSRVWATVSPRKQRDLAHTHPPDFLRACFLCKGRLVAGRDIYMYRGDSAFCSSECREKQMKQDERKEKCGVGVPSKPQTLLAL 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01211 134 Pfam zinc-finger of the FCS-type, C2-C2 68 117 IPR007650 -
Cca03g01211 134 PANTHER FCS-LIKE ZINC FINGER 5 1 120 - -
Cca03g01211 134 MobiDBLite consensus disorder prediction 1 52 - -
Cca03g01211 134 ProSiteProfiles Zinc finger FLZ-type profile. 74 118 IPR007650 -
Cca03g01211 134 PANTHER PROTEIN INCREASED RESISTANCE TO MYZUS PERSICAE 1 1 120 - -
Cca03g01211 134 MobiDBLite consensus disorder prediction 113 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01211 Cca-Chr3 28853372 28854321 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01211 - - var:108331042 168.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01211 03 28853372 28854321 Cca03g01211 03 28853372 28854321 ECH
Cca05g01036 05 26985869 26987017 Cca03g01211 03 28853372 28854321 PCT