LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g01020	ATGGAAAAGACAGAGCTAGTGGAGGCAAATAAGGCAAGTCCTCCGGCTGTTGGAGAGGTAAAAGGAGATTTTTTTACTGCTCGGAGTGAAGAAGATTGGGAAAAACACTCGGTGTGTCTGGAAACCCAAAATGTAGACTGCGATGGCACTGAGTTTGTTAACGATCAAGATGATGTATTGGACAATGTAACTTCTCAAGCTGTTGAAAATCTGGAAGGAGGTGCTTTTACCGTTCAGAGTGAAGATCATGACAAGGAATCCAAAGAGGAGAAAATTCAAAATACTGGTCATGATGGCCGCAAGTTTGACAATGAGCAAGAAAATATGTTAGACAAGATAGATGAGGTGGTAGATGTAGATTTGAGTAGTCATGAGGAAACAAAGGACAATGTGACAGAAGAGTCTCAGTTGGCTCGGAGAGTATGCGATAGTTGTGATTTGCAGTGTGGATCTCCACAAGAAAACTTGGAGATCAGTACTGTTCCAGGTGACTGGTTTCAAATGGAGCATGGGAGTGATTCAATGAAATCTGAAAATCAAGTTGATATTCTTGGACAAGAGAATTCTGGTGTTAAGGTAGACAACAGTGGAGATTTTGAGCCTAAAAGTCAAGAAGTAAGTCTAGATAGTAATTTCGAACACCATGGCTTGGCTATAGAGGAGGATGACAGTAGAAGCATGGAATCTGCACAAATGAATCAAAAGAAAGAGAAAACTTCAGAGGATAATAATTTGGAGCCTGTAGTTGGTGGATCTGAGGTTCATAGCAGTGAAGCTGGCTGCAGCACATCTATGCGTGCTTTGGATACCAATCCAGAGGCTCCACGTGTTGTTGATAAGGCTATTTCTCTTAGAAACTTTGTGAGGGAGAAAAGTATAATAGCAGTCTCCATTGTACTGCGTCACCTGTCTGGAAAAAGAGATGAATGTACTGTGAGTAATTCTGGTGATGTAGGTAACGATGCTTCAGATCTTTCAAGAGACAGTGAAACCAAAGAGGTTTCTGAGAAGACAGTGGAGAAAACAACTTGGAATCCCTTAAATTATATTAAAATGTCATCTGATGTTGATGCTGAAAATAAAACTGTCCTGACGGAGGTACCTATGACTGAAGGTCCACCAGTACCCATAGCTATGAAAGGAAGGGTTATATTGTACACAAGACTAGGGTGCCAAGAATGTAAAGAGGTTAGGAAGCTTTTGTATATGAAAAGGCTTAGATATGCGGAAATCAACATTGATGTGTATCCCAGTAGAAAGATGGAACTGGAGAAGAATTCTGGATCTACTTCTGTTCCCAAGGTTTTCTTCAATGAAATACTTATTGGAGGCTTGAGTTCGCTAAAGTCCTTAAATGAGTCTGGCAAGCTAAATGAGAAGATTGACTACCTTATTAATGAAGCACCATCATTTGAATGCCCAGTTCCACCACTTTCTGGAGAGGATGATGCATCCAGTAGGGGAGCACTTGATGAAATGGCTCTAATTGTCCGCAAAATGAAAGAATGTATTGTTGTGAAGGACCGATTTTGCAAAATGCGAAGGTTTCCTAACTGCTTTCTTGGCTCTGAAGCTGTGGACTTCTTGTCAGAAGATCAATATTTGGAAAGGAAAGAGGCTGTTGAGTTTGCACGAAAACTTGCCAGCAAACTCTTCTTTCAGCATGTTCTTGATGAGAATCTATTTGAGGATGGCAATCACCTGTATCGGTTTTTGGATGATGATCCAATTGTGGCATCTTTTTGTTATAACATTCCGAGAGGGATAATTACTGTGAAACTTAAGCCTATAACAGAAGTTGCATCCAGGCTGAGGCTTTTGTCCTATGCAATGTTTGAAGCCTATGCCTCTGAAGATGGACGTCATGTTGACTACAGAAGTATGCATGGAAGTGAGGAGTTTGCAAGGTATCTAAGAATAGTAGAAGAGCTCCAAAGAGGGGAAATATGGAATTTGTCTAGAGAAGAGAAGCTTGCTTTTTTTATTAATCTATATAATATGATGACCATCCATGCAATTTTAGTATGGGGTCACCCTTCTGGAGTGCTGGAAAGAAGGAAATTGTTTGGAGACTTTAAATATGTTATTGGTGCATCCACCTACTCACTTTCAGCTATTCAAAATGGCATTTTGAGGGGGAACCAGCGACCACCATATACCCTTATGAAGCTATTTAGTGCAAAAGATAAACGTTTAAGGGTGGCCCTCCCTTTCCATGAGCCCCTTATTCATTTTGCTTTAGTATGTGGTACTCGATCTGGACCAGCACTTCGGTGCTATTCTCCTGGGGACATTGACAAAGAATTAGTGGATGCAGCCCGTAATTTCCTAAGAAGTGGAGGCCTTTCAATAGATTTTACTGCAAAGGTTGCATATGCCAGTATGATCCTTAAATGGTTTAGTGTAGATTTCGGTAAGAGTGAGGTAGAGGTCCTGAAGCATGTGTCAATTTACTTAGATCCAGCTGACTCAGAATTATTGTTGGACTTGCTTGCCACTTCTGAGTTGAAGGTGATATATCAGCCTTATGACTGGGGTTTGAACTGCTAG	2550	0.4078	MEKTELVEANKASPPAVGEVKGDFFTARSEEDWEKHSVCLETQNVDCDGTEFVNDQDDVLDNVTSQAVENLEGGAFTVQSEDHDKESKEEKIQNTGHDGRKFDNEQENMLDKIDEVVDVDLSSHEETKDNVTEESQLARRVCDSCDLQCGSPQENLEISTVPGDWFQMEHGSDSMKSENQVDILGQENSGVKVDNSGDFEPKSQEVSLDSNFEHHGLAIEEDDSRSMESAQMNQKKEKTSEDNNLEPVVGGSEVHSSEAGCSTSMRALDTNPEAPRVVDKAISLRNFVREKSIIAVSIVLRHLSGKRDECTVSNSGDVGNDASDLSRDSETKEVSEKTVEKTTWNPLNYIKMSSDVDAENKTVLTEVPMTEGPPVPIAMKGRVILYTRLGCQECKEVRKLLYMKRLRYAEINIDVYPSRKMELEKNSGSTSVPKVFFNEILIGGLSSLKSLNESGKLNEKIDYLINEAPSFECPVPPLSGEDDASSRGALDEMALIVRKMKECIVVKDRFCKMRRFPNCFLGSEAVDFLSEDQYLERKEAVEFARKLASKLFFQHVLDENLFEDGNHLYRFLDDDPIVASFCYNIPRGIITVKLKPITEVASRLRLLSYAMFEAYASEDGRHVDYRSMHGSEEFARYLRIVEELQRGEIWNLSREEKLAFFINLYNMMTIHAILVWGHPSGVLERRKLFGDFKYVIGASTYSLSAIQNGILRGNQRPPYTLMKLFSAKDKRLRVALPFHEPLIHFALVCGTRSGPALRCYSPGDIDKELVDAARNFLRSGGLSIDFTAKVAYASMILKWFSVDFGKSEVEVLKHVSIYLDPADSELLLDLLATSELKVIYQPYDWGLNC	849

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca05g01020	849	MobiDBLite	consensus disorder prediction	311	338	-	-
	Cca05g01020	849	MobiDBLite	consensus disorder prediction	214	243	-	-
	Cca05g01020	849	PANTHER	ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE	79	848	-	-
	Cca05g01020	849	MobiDBLite	consensus disorder prediction	323	338	-	-
	Cca05g01020	849	Gene3D	-	489	578	IPR036388	-
	Cca05g01020	849	MobiDBLite	consensus disorder prediction	78	103	-	-
	Cca05g01020	849	Pfam	Protein of unknown function, DUF547	651	777	IPR006869	-
	Cca05g01020	849	Gene3D	Glutaredoxin	378	463	-	-
	Cca05g01020	849	SMART	DEP_3	499	573	IPR000591	GO:0035556
	Cca05g01020	849	CDD	DEP	496	570	-	-
	Cca05g01020	849	Pfam	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	505	571	IPR000591	GO:0035556
	Cca05g01020	849	PANTHER	ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE	79	848	-	-
	Cca05g01020	849	SUPERFAMILY	Thioredoxin-like	380	462	IPR036249	-
	Cca05g01020	849	MobiDBLite	consensus disorder prediction	189	260	-	-
	Cca05g01020	849	ProSiteProfiles	DEP domain profile.	500	573	IPR000591	GO:0035556
	Cca05g01020	849	ProSiteProfiles	Glutaredoxin domain profile.	371	468	-	-
	Cca05g01020	849	Pfam	Glutaredoxin	383	439	IPR002109	-
	Cca05g01020	849	SUPERFAMILY	"Winged helix" DNA-binding domain	493	581	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g01020	Cca-Chr5	26634994	26642275	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca05g01020	-		-	ccaj:109814814	1659.04

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca05g01020	05	26634994	26642275	Cca05g01020	05	26634994	26642275	ECH
	Cca05g01020	05	26634994	26642275	Cca03g01196	03	28524155	28528816	PCT