Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca03g01196 | ATGGAAAATAAACAGTTAGCGAAAACGAATGGAGCAACTTCTCAAGCTGTTGAGAACGTGCGAGTAGATGATTTGGCAATTGATCAGGATAAACAATCAAAGGAGGTGAAACCTGAGAATATTGTTCATGATGGTCCTGAGTTTGACGATAAGCTAGATGATATATCAGATGAGATAAATGATGTGGAGGATGTAAGGTCTAAGAGAGAAGATGAGAGTAGAGATTTGCTATCTGGAACTCAACTAGAAAAGTTAGAAACCAAATCTGAAACTGAAGTTAGTACTGATAAGCAAGAGGATTCTGGTGATAAGATGGGTGCGGGTGCGGGTGCGGGTGGAGATTTAGAGCCTAAAAATAAAGAAACCAATCTAGATAATAAATCTGGACAAAGTGAGTTGGCTAAAGAGGTGGATGATAGGGAATCAACGCAGATGTTTGATAAATCAGATGAAATTCCAAGCGAGGACCACAATTTGGAGCCTGTATTTGATGGAACAGAGGTTCCAGGGATGGAAGCTAACCGGAGCACATCTGGCCGCAGGTCGGATGTAGATCCGGACTCTCCAGGTGTGGTTGAGAAGGCAGTGGCTCTCAAGAATTTTGTTAAGGAGAAGGGTGCAGTGGCAGTCTCCACCATGATGCGTCGCCTTTCTGGAAAAAGAGATGAAGTTGTTGATGATGAAGGTAAGGATGTTTCAGACATCACTGGAGTTGGTGAAACCAAAGTGGTGTCTGAGAAGGCAGTGGAGAAATTTGACTGGAATCCCTTAAATTACATCAAGAAGTCATCTGACGTTGGTGTGGGAAACAAAACTGATCAGAGGGACTCAATATCCATGAAAGGGAGGGTTATACTGTACACAAAACTAGGTTGCCAAGAATCTAAAGAGATTAGACTATTTTTGCGTATAAAAAGGCTTAGATATGTTGAAATCAATATTGATGTGTACCCCAGTAGAAAGACGGAGCTGGAGAAGATTTCTGGATCTACTTCTGTACCCAAGGTTTTTTTCAATGAAATACTTATTGGAGGCTTGAGTGAGTTGAAGACCCTAGATGAGTCTGGCAGGCTTGATGAGAAGGTTGACTTTCTTATTGCTGAAGCACCATTATTTGAAGCCCCATCTCCACCTCTCTCTGGAGAGGATGATGTGCCCAGTAGTGGACCAGTTGATGAAATGGCAATCATTGTCCGCAAAATGAAAGAATCTATTGCAGTGAAGGATCGATTGTACAAAATGCGCAGGTTCACTAACTGTTTTCTTGGCTCAGAAGCTATCGACTTCTTATCAGAAGATCAATATTTGGAAAGGCCAGAGGCTGTTGAGTTTGCACGAAAGCTTGCTGAAAAACTCTTCATTCGACATATTCTGGATGAGAATCTATTTGAGGATGGAAATCACTTGTATCGGTTTTTGGATGATGATCCAATTGTGGTGTCACAATGTCACAACATTCCTAGAGGCATAATTACCTTGAAGCCTAAGCCTTTAGCTGAAATTGCATCAAGGCTGAGGTTTCTGTCCCGTGCGATGTTTGAAGCCTATGCTTATGAAGATGGACGTTCTGTTGATTATGCAAGTATACATGGAAGTGAGGAGTTCGCAAGGTATTTGAGAATAGTCGAAGAGCTACAAAGAGTGGAAATATCGGACTCGTCTAGAGAGGAGAAGCTTGCATTCTTTATTAATCTCTATAATATGATGGCCATCCATGCAATCATAATATTGGGCCATCCAGATGGAGCACTGGAAAGAAGGAAATTGTTTGGAGAGTTCAAATACGTTATTGGTGGATCAACCTACTCGCTTTCAGCTATTCAAAATGGCATATTGAGGGGAAACCAGCGACCACCATATAACCTTAAGAAGCCATTTGGTGCAAAAGATAAACGCTCGGCAGTGGCGCTTCCTTATCCTGAGCCTCTTATTCATTTTGCTTTGGTTCATGGTACCCGATCAGGACCTGCACTTCGGTGCTACTCGCCTGGAAATATTGACGAACAGTTATTGGATGCAGCCCGTAATTTTTTGAGAAATGGAGGCGTTGTAATTGATTTGACTGCAAAGGCTGTAAATGCTACTAAGATCCTTAAATGGTACAGTATAGATTTTGGCAAGAACGAGGTAGAGGTGATAAAGCATGTTTCAAACTACTTAGATCCAGCTGACTCGGAAGTATTGTTGGACCTGCTTGCTACTTCCGACTTGAAGGTGTCATATCAGCCTTATGACTGGGGCTTGAACTGCTAG | 2253 | 0.4203 | MENKQLAKTNGATSQAVENVRVDDLAIDQDKQSKEVKPENIVHDGPEFDDKLDDISDEINDVEDVRSKREDESRDLLSGTQLEKLETKSETEVSTDKQEDSGDKMGAGAGAGGDLEPKNKETNLDNKSGQSELAKEVDDRESTQMFDKSDEIPSEDHNLEPVFDGTEVPGMEANRSTSGRRSDVDPDSPGVVEKAVALKNFVKEKGAVAVSTMMRRLSGKRDEVVDDEGKDVSDITGVGETKVVSEKAVEKFDWNPLNYIKKSSDVGVGNKTDQRDSISMKGRVILYTKLGCQESKEIRLFLRIKRLRYVEINIDVYPSRKTELEKISGSTSVPKVFFNEILIGGLSELKTLDESGRLDEKVDFLIAEAPLFEAPSPPLSGEDDVPSSGPVDEMAIIVRKMKESIAVKDRLYKMRRFTNCFLGSEAIDFLSEDQYLERPEAVEFARKLAEKLFIRHILDENLFEDGNHLYRFLDDDPIVVSQCHNIPRGIITLKPKPLAEIASRLRFLSRAMFEAYAYEDGRSVDYASIHGSEEFARYLRIVEELQRVEISDSSREEKLAFFINLYNMMAIHAIIILGHPDGALERRKLFGEFKYVIGGSTYSLSAIQNGILRGNQRPPYNLKKPFGAKDKRSAVALPYPEPLIHFALVHGTRSGPALRCYSPGNIDEQLLDAARNFLRNGGVVIDLTAKAVNATKILKWYSIDFGKNEVEVIKHVSNYLDPADSEVLLDLLATSDLKVSYQPYDWGLNC | 750 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca03g01196 | 750 | ProSiteProfiles | DEP domain profile. | 401 | 474 | IPR000591 | GO:0035556 | |
| Cca03g01196 | 750 | SUPERFAMILY | Thioredoxin-like | 276 | 362 | IPR036249 | - | |
| Cca03g01196 | 750 | MobiDBLite | consensus disorder prediction | 118 | 162 | - | - | |
| Cca03g01196 | 750 | SUPERFAMILY | "Winged helix" DNA-binding domain | 395 | 478 | IPR036390 | - | |
| Cca03g01196 | 750 | PANTHER | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE | 1 | 749 | - | - | |
| Cca03g01196 | 750 | CDD | DEP | 393 | 471 | - | - | |
| Cca03g01196 | 750 | Coils | Coil | 52 | 72 | - | - | |
| Cca03g01196 | 750 | Gene3D | Glutaredoxin | 279 | 364 | - | - | |
| Cca03g01196 | 750 | SMART | DEP_3 | 401 | 474 | IPR000591 | GO:0035556 | |
| Cca03g01196 | 750 | MobiDBLite | consensus disorder prediction | 61 | 103 | - | - | |
| Cca03g01196 | 750 | Gene3D | - | 390 | 478 | IPR036388 | - | |
| Cca03g01196 | 750 | Pfam | Protein of unknown function, DUF547 | 552 | 678 | IPR006869 | - | |
| Cca03g01196 | 750 | PANTHER | ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE | 1 | 749 | - | - | |
| Cca03g01196 | 750 | Pfam | Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) | 405 | 472 | IPR000591 | GO:0035556 | |
| Cca03g01196 | 750 | Pfam | Glutaredoxin | 284 | 340 | IPR002109 | - | |
| Cca03g01196 | 750 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Cca03g01196 | 750 | MobiDBLite | consensus disorder prediction | 23 | 50 | - | - | |
| Cca03g01196 | 750 | ProSiteProfiles | Glutaredoxin domain profile. | 272 | 369 | - | - | |
| Cca03g01196 | 750 | MobiDBLite | consensus disorder prediction | 1 | 189 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca03g01196 | Cca-Chr3 | 28524155 | 28528816 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca03g01196 | - | - | ccaj:109797380 | 1462.97 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca03g01196 | 03 | 28524155 | 28528816 | Cca03g01196 | 03 | 28524155 | 28528816 | ECH | |
| Cca05g01020 | 05 | 26634994 | 26642275 | Cca03g01196 | 03 | 28524155 | 28528816 | PCT |