Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g01012 ATGAAAACTCGTAGTTCTACGAAGATCTCTGCAAAATGGGTTCCAATTTTTTCTGTATTTTCCTTCCTTATTGGGATGCTCATAACTTCCAGGATGTGGGAACCCCCTGAATCTAACGGGGCGTTTCTGTCGAAACATCGACATAATCAAGAACTTGAAGTGGTGTCAGGGGATTGTGCTACTAAAAAGCCTGTGCAGGATAAGGATGTAATCAGTGAAGTATACAAAACCCATGAGGCCATTCAATCTCTAGACAAGCAAGTTTCCATGCTTCAGATGGAGCTGGCAGCAGCAAGGAGTACTCGAGAACCTGAGATCTCGGATGGTTTGGCTAACACCTTGGCTTCGGAGGTCTCCACTGAAGGCCCTCCCAAGAAGAAGGTGTTTGTAGTGATTGGCATAAACACTGCTTTCAGTAGCAGGAAGCGGCGAGATTCAGTTAGAGAGACTTGGATGCCTCAAGGAGAACAGCTTATTCAATTGGAACGTGAGAAGGGAATTGTCATTAGATTCATGATTGGTCACAGTGCAACTTCTAACAGCATTCTAGATCGAGCTATTGATTCAGAAGAAGCCCAGCACAAAGACTTCCTTCGCCTGGAACATGTTGAAGGGTATCATGAATTGTCTGCAAAGACAAAAATTTTCTTCTCTACAGCAGTTGCAAAATGGGATGCTGATTTCTACGTAAAAGTGGATGATGATGTGCATGTCAATTTAGGCGTACTTGCAACAACCCTTGCTCGTCACCGTTCAAAACCCAGGGTCTACATTGGATGTATGAAATCTGGACCTGTTCTTTCTCGAAAGGATGTTAAGTATCATGAACCTGAGTTTTGGAAATTTGGAGAAGAAGGGAACAAATACTTCCGACATGCAACTGGGCAGATCTATGCAATCTCTAAGGATCTAGCCACCTACATTTCCATTAACCAGCCAATATTGCACAAATATGCCAATGAAGATGTGTCACTTGGTGCATGGTTCATAGGTCTAGAAGTTGAGCACATAGATGACCGCAGTATGTGCTGTGGAACTCCTCCAGACTGTGAGTGGAAGGCACAAGCAGGTAACATATGTGTTGCATCCTTTGACTGGAGCTGCAGTGGAATCTGCAAGTCAGTGGAGAAGATCAAATTTGTGCATTCAAAGTGTGGTGAAGGAGATGGAGCTGTTTGGAGTGCTTTATTTTAG 1194 0.4372 MKTRSSTKISAKWVPIFSVFSFLIGMLITSRMWEPPESNGAFLSKHRHNQELEVVSGDCATKKPVQDKDVISEVYKTHEAIQSLDKQVSMLQMELAAARSTREPEISDGLANTLASEVSTEGPPKKKVFVVIGINTAFSSRKRRDSVRETWMPQGEQLIQLEREKGIVIRFMIGHSATSNSILDRAIDSEEAQHKDFLRLEHVEGYHELSAKTKIFFSTAVAKWDADFYVKVDDDVHVNLGVLATTLARHRSKPRVYIGCMKSGPVLSRKDVKYHEPEFWKFGEEGNKYFRHATGQIYAISKDLATYISINQPILHKYANEDVSLGAWFIGLEVEHIDDRSMCCGTPPDCEWKAQAGNICVASFDWSCSGICKSVEKIKFVHSKCGEGDGAVWSALF 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g01012 397 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 8 389 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca05g01012 397 Coils Coil 81 101 - -
Cca05g01012 397 Pfam Galactosyltransferase 142 339 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca05g01012 397 Pfam Domain of unknown function (DUF4094) 10 100 IPR025298 -
Cca05g01012 397 Gene3D - 119 343 - -
Cca05g01012 397 PANTHER HEXOSYLTRANSFERASE 8 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g01012 Cca-Chr5 26435255 26439556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g01012 1 397 Glycosyltransferase AT1G77810 72.750 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g01012 K20855 - gmx:100804402 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01012 05 26435255 26439556 Cca05g01012 05 26435255 26439556 ECH
Cca05g01012 05 26435255 26439556 Cca03g01184 03 28337748 28342295 PCT