Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00940 ATGGATGTTAAAAGCAAAGCAATATCATTGCACTTGCCTTTGCTATTTCTTCTATTTTCTGCCATTTTCCCACTCTCTTTCTCAGCTTCCAATCAACCCCGCAACGCCAAGAAGCCCACCACCCCATCTTCTCATAATCATCGCCTTTCCTCCTCAGCTCTTTTCAAAGTTCAAGGAAATGTCTACCCTCTTGGACATTACACAGTGTCCCTCAACATTGGCTATCCCCCCAAGCTTTACGACCTTGACATTGACTCAGGTAGTGACCTCACTTGGGTTCAGTGTGATGCACCATGTAAAGGTTGCACCAAGCCTCGTGATCAACTTTATAAACCCAATCACAACCTTGTGCAATGTGTGGACCAATTGTGTTCTGAAGTGCACTTATCAACAGACCATCATTGTGCTTCACCAGATGACCAATGTGACTATGAAGTTGAGTATGCAGATCATGGATCATCTCTGGGTGTGCTAGTCCGGGACTATGTTCCCCTTCAATTCACTAATGGCTCTGTGGTGCGCCCTAGGATAGCCTTTGGGTGTGGATATGATCAAAAGTATTCTGGTTTTACCTCCCCAACCACAGCAGGAGTCCTTGGCCTTGGCAATGGCAGAGCAAGCATTTTGTCTCAGCTTCATTCTTTGGGTCTGATCCGCAATGTGGTTGGCCACTGCTTAAGTGCACGAGGAGGAGGGTTTTTATTCTTTGGATATGATCTCATTCCCTCATCAGGAATAGTTTGGACACCCATGTTGCCTAGTTCTTCAGAGAAACACTACAGCTTAGGACCAGCAGATCTGTATTTCAATGAAAAGGCTACTACTGTTAAGGGTCTTGAACTTATCTTCGACAGTGGGAGCTCTTACACATACTTCAACTCCCAAACCTATCAAATTATTGTTGACTTGGTAACTAATGATTTAAAGGGAAAACAGTTGAAAAGGGCAACCGAGGATCCATCACTTCCAATTTGTTGGAAGGGTGCAAAGTCTTTCAACTCTTTAAGTGATGTCAAGAAATATTTCAAGCCCCTAGCGTTGAGCTTCACAAACTCCAATAATTTGCAGATGCATCTACCACCAGAAGCTTATCTAATTATCACTAATCATGGTAATGTGTGCTTGGGGATTCTGGATGGCACTGAAGTAGGACTAGAAAATCTTAACATAATAGGAGACATCTCTTTACAAGATAAAATCGTGATATATGACAACGAGAAACAGCAGATTGGATGGGTTTCTTCAAATTGCGACAGTGTTAATAGTCATTTGGAAGGTGATTTTCCACACCCATACGCAGCCAATTTGGGTCTCTTTGGGGAACGTTGCCCAGCATCTTATGAAGTAACAGATGGTCAATGA 1362 0.431 MDVKSKAISLHLPLLFLLFSAIFPLSFSASNQPRNAKKPTTPSSHNHRLSSSALFKVQGNVYPLGHYTVSLNIGYPPKLYDLDIDSGSDLTWVQCDAPCKGCTKPRDQLYKPNHNLVQCVDQLCSEVHLSTDHHCASPDDQCDYEVEYADHGSSLGVLVRDYVPLQFTNGSVVRPRIAFGCGYDQKYSGFTSPTTAGVLGLGNGRASILSQLHSLGLIRNVVGHCLSARGGGFLFFGYDLIPSSGIVWTPMLPSSSEKHYSLGPADLYFNEKATTVKGLELIFDSGSSYTYFNSQTYQIIVDLVTNDLKGKQLKRATEDPSLPICWKGAKSFNSLSDVKKYFKPLALSFTNSNNLQMHLPPEAYLIITNHGNVCLGILDGTEVGLENLNIIGDISLQDKIVIYDNEKQQIGWVSSNCDSVNSHLEGDFPHPYAANLGLFGERCPASYEVTDGQ 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00940 453 ProSiteProfiles Peptidase family A1 domain profile. 67 413 IPR033121 -
Cca05g00940 453 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 2 420 - -
Cca05g00940 453 Gene3D Acid Proteases 240 423 IPR021109 -
Cca05g00940 453 SUPERFAMILY Acid proteases 59 420 IPR021109 -
Cca05g00940 453 PRINTS Pepsin (A1) aspartic protease family signature 73 93 IPR001461 GO:0004190|GO:0006508
Cca05g00940 453 PRINTS Pepsin (A1) aspartic protease family signature 281 292 IPR001461 GO:0004190|GO:0006508
Cca05g00940 453 PRINTS Pepsin (A1) aspartic protease family signature 389 404 IPR001461 GO:0004190|GO:0006508
Cca05g00940 453 Gene3D Acid Proteases 42 237 IPR021109 -
Cca05g00940 453 PANTHER ASPARTYL PROTEASES 2 420 IPR001461 GO:0004190|GO:0006508
Cca05g00940 453 Pfam Xylanase inhibitor N-terminal 67 237 IPR032861 -
Cca05g00940 453 CDD nucellin_like 65 417 IPR033823 GO:0004190
Cca05g00940 453 Pfam Xylanase inhibitor C-terminal 279 412 IPR032799 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00940 Cca-Chr5 25140766 25143766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00940 45 420 Miscellaneous Gene Families AT1G77480 59.524 1.68e-166 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00940 - - gmx:100790299 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00940 05 25140766 25143766 Cca05g00940 05 25140766 25143766 ECH
Cca05g00940 05 25140766 25143766 Cca03g00216 03 3206954 3211856 PCT