Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00216 ATGAAGTTGGGATTGTTGGTATTGCTAGTCTTGTTCAGCTCCTCCTCTATTTGTTCAGCTTGGTTTGGTAGTAAACACAAaacttcaagtacaagtacaagttcaagttcaagtggaagCGGAAGGTACTCCAATCGTCACGAAGCATCATCGTCATCATCCTCGCCATTCCTACTAAACCGTTTTCGTTCTAGCTCATCCGTCGTGTTACCGGTTCACGGCAATGTCTATCCTGTTGGGTTTTATAATGTGACTCTGAACATCGGGCAGCCACCAAGGCCATATTTTCTTGATATTGACACGGGTAGCGACCTCACGTGGCTTCAATGCGATGCCCCTTGTGCCCGTTGCTCTCAGACACCCCATCCACTTTACAGGCCCAGCAATGACTTAGTGCCATGCAGACATGCCCTCTGTGCATCCTTGCACCACACTGATAACTACAACTGTGAAGACCCACATCAATGTGACTACGAAGTTGAGTATGCAGATCATTACTCATCCCTTGGTGTACTTGTCCATGATGTCTATACTCTCAACTTTACAAATGGAGCCCAACTTAAAGTTCGTATGGCACTTGGATGTGGATATGATCAGATTTTTCCAGATCCTTCACACCATCCGTTAGATGGAATGCTTGGCCTTGGCAGAGGAAGAACCAGCTTGACATCACAGCTGAATAGTCAGGGTTTGGTGCGAAACGTGATTGGACACTGTTTGAGTGCACAAGGAGGAGGGTATATCTTCTTTGGAGATGTTTATGATTCTTCTAGACTGACTTGGACTCCGATGTCATCCAGAGACTACAAGCATTACTCAACAGCAGGGGCAGCTGAACTCCTTTTTGGAGGGAAGAAAGCTGGGGTTGGAAGTCTTTTTGCTGTTTTTGACACCGGGAGTTCTTACACTTACTTCAACTCTAATGCTTACCAAGCACTAATTTCTTGGTTGAGGAAAGATTTAGTTGGAAAGCCCCTAAAAGAAGCACATGTTGATCAAACTCTCCCTCTCTGTTGGCAAGGTAAAAGACCTTTCAGAAGCGTATATGAAGTGAGAAAATACTTCAAGCCAATCACTCTTGGTTTCACTAGCAATGGGAGAAATAAAGCTCCGTTTGAGATCCCTCCTGAAGCGTATTTGATAGTATCAAACATGGGAAATGTTTGCTTGGGCATTCTAAACGGCTCTGAAGTAGGAATGGGGGATATGAACCTAATTGGAGACATATCCATGTTAAACAAAGTGATGGTTTTTGACAACGACAAGCAATTGATTGGTTGGACATATGCAGATTGTGACCGTGTTCCGAAATCCAGAGATGTCAGCATTTGA 1332 0.4309 MKLGLLVLLVLFSSSSICSAWFGSKHKTSSTSTSSSSSGSGRYSNRHEASSSSSSPFLLNRFRSSSSVVLPVHGNVYPVGFYNVTLNIGQPPRPYFLDIDTGSDLTWLQCDAPCARCSQTPHPLYRPSNDLVPCRHALCASLHHTDNYNCEDPHQCDYEVEYADHYSSLGVLVHDVYTLNFTNGAQLKVRMALGCGYDQIFPDPSHHPLDGMLGLGRGRTSLTSQLNSQGLVRNVIGHCLSAQGGGYIFFGDVYDSSRLTWTPMSSRDYKHYSTAGAAELLFGGKKAGVGSLFAVFDTGSSYTYFNSNAYQALISWLRKDLVGKPLKEAHVDQTLPLCWQGKRPFRSVYEVRKYFKPITLGFTSNGRNKAPFEIPPEAYLIVSNMGNVCLGILNGSEVGMGDMNLIGDISMLNKVMVFDNDKQLIGWTYADCDRVPKSRDVSI 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00216 443 MobiDBLite consensus disorder prediction 24 55 - -
Cca03g00216 443 Pfam Xylanase inhibitor C-terminal 293 427 IPR032799 -
Cca03g00216 443 Gene3D Acid Proteases 252 436 IPR021109 -
Cca03g00216 443 PANTHER ASPARTYL PROTEASES 5 437 IPR001461 GO:0004190|GO:0006508
Cca03g00216 443 ProSiteProfiles Peptidase family A1 domain profile. 82 428 IPR033121 -
Cca03g00216 443 Gene3D Acid Proteases 58 251 IPR021109 -
Cca03g00216 443 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190|GO:0006508
Cca03g00216 443 PRINTS Pepsin (A1) aspartic protease family signature 294 305 IPR001461 GO:0004190|GO:0006508
Cca03g00216 443 PRINTS Pepsin (A1) aspartic protease family signature 404 419 IPR001461 GO:0004190|GO:0006508
Cca03g00216 443 SUPERFAMILY Acid proteases 74 435 IPR021109 -
Cca03g00216 443 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 437 - -
Cca03g00216 443 Pfam Xylanase inhibitor N-terminal 82 252 IPR032861 -
Cca03g00216 443 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 294 305 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00216 Cca-Chr3 3206954 3211856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00216 52 438 Miscellaneous Gene Families AT1G44130 52.296 4.46e-145 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00216 - - gmx:100819172 776.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00216 03 3206954 3211856 Cca03g00216 03 3206954 3211856 ECH
Cca05g00940 05 25140766 25143766 Cca03g00216 03 3206954 3211856 PCT