Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00927 ATGATTGAGAACGGTGGCAACAAGAATCATCAACAAACCTTTGAAGTCTCCACTGACACGCTTCCACAAGTAGGTTCCAAGTGCTTTGATGATGATGGCCGTCTCAAAAGAACTGGAACGGTTTGGACTGCAAGTGCTCACATAATAACAGCTGTTATTGGTTCTGGGGTGTTATCTTTGGCTTGGGCTATTGCTCAACTTGGTTGGGTTGCTGGTCCTGCTGTGATGATTCTATTCTCAATTGTGACATATTACACCTCAAGGCTTCTAGCTGCTTGTTACCGTACTGGTGATGAACTCACTGGCAAAAGAAACTACACTTACACACATGCTGTTAGATCCTACCTTGGTGGGTCTATGGTCAAGATTTGTGGGTGGGTTCAGTATGTGAACCTTTTTGGAGTGGCAGTTGGGTACACCATAGCAGCTTCCATTAGCATGATGGCAGTCAAAAGGTCTAATTGTTATCATAGCAGCGGAGGGAAAAATCCATGCAAAATGAACAGCAATATTTACATGATTTCATTTGGTATTGTGGAAATTATCTTCTCCCAAATTCCAGATTTTCATGAGTTATGGTGGCTCTCTATTGTAGCTGCTGTCATGTCCTTCACATACTCATTTATTGGACTTGGCCTTGGTGTTGGTAAAGTTGTAGGAAATGGAGGAATTAAAGGAAGCCTAACTGGGGTAACTGTTGGCAATGTAATTGCTGGCAGCACTGTGACAGAAGCCAAAAAAGTTTGGAGGAGTTTCCAAGCTCTTGGCAACATAGCATTTGCCTACTCCTACTCTATGATCCTTATAGAAATTCAGGACACAATAAAATCCCCTCCAGCAGAGTCAAAGACAATGTCAAAGGCTACATTAGTCAGTGTTTTAGTCACGACCGTTTTCTACATGATGTGCGGTTGCTTTGGCTATGCTGCTTTTGGAGATGCAAGCCCTGGAAACCTTCTCACTGGTTTTGGCTTCTACAACCCTTACTGGCTCCTTGACATAGCCAATGTTGCCATTGTGGTTCATCTTGTTGGTGCATACCAAGTTTACTGCCAACCCCTTTTCTCATTTGTTGAAAAAACTGCGTCAGAAAAGTTTCCAAATAGTGATTTTGTGAACAAAGAAATTTCAGTGCCAATCTTTGGTTGCAAACCCTTCAAGTTGAACATGTTCAGAGTGATTTGGAGGACAATTTTTGTGATCATATCTACCCTGTTGTCCATGCTCCTACCATTCTTCAATGACATTGTGGGGCTTATGGGAGCCGTTGGATTTTGGCCCCTCACAGTGTATTTCCCAGTGGAGATGTATATAACTCAAAAGAACATACCAAAGTGGACCACAAAATGGATATGCTTACAGGTGCTTAGTGCTGCATGCCTTGTAATTACTTTAGTTGCTGCAGCAGGTTCAATTGCTGGGGTCATTGATGATCTTAAAGTTTACAAGCCATTCACCAGCAGCTACTAA 1470 0.4238 MIENGGNKNHQQTFEVSTDTLPQVGSKCFDDDGRLKRTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWVAGPAVMILFSIVTYYTSRLLAACYRTGDELTGKRNYTYTHAVRSYLGGSMVKICGWVQYVNLFGVAVGYTIAASISMMAVKRSNCYHSSGGKNPCKMNSNIYMISFGIVEIIFSQIPDFHELWWLSIVAAVMSFTYSFIGLGLGVGKVVGNGGIKGSLTGVTVGNVIAGSTVTEAKKVWRSFQALGNIAFAYSYSMILIEIQDTIKSPPAESKTMSKATLVSVLVTTVFYMMCGCFGYAAFGDASPGNLLTGFGFYNPYWLLDIANVAIVVHLVGAYQVYCQPLFSFVEKTASEKFPNSDFVNKEISVPIFGCKPFKLNMFRVIWRTIFVIISTLLSMLLPFFNDIVGLMGAVGFWPLTVYFPVEMYITQKNIPKWTTKWICLQVLSAACLVITLVAAAGSIAGVIDDLKVYKPFTSSY 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00927 489 PANTHER OS05G0424000 PROTEIN-RELATED 9 483 - -
Cca05g00927 489 Pfam Transmembrane amino acid transporter protein 37 476 IPR013057 -
Cca05g00927 489 PANTHER AMINO ACID CARRIER 9 483 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00927 Cca-Chr5 24868240 24871532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00927 8 489 Organic Solute Cotransporters AT1G77380 72.257 0.0 728
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00927 K24917 - gmx:100775662 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00927 05 24868240 24871532 Cca05g00927 05 24868240 24871532 ECH
Cca03g00205 03 3099400 3105796 Cca05g00927 05 24868240 24871532 PCT